Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1136 ATGTCCACCAACAATGTGGTGGTTCTAGACAATGGCGGAGGCTTAATCAAAGCAGGTCTCGGCGGCGAGCGCGACCCCTCAACGGTTGTTCCCAACTGCCTCTACCGTCCCCCTTCATCTAAAAAATGGCTCCACCCAAATCCAGTCAACCCCACCACCACTGCCACCGAAGTGGACCTCACCTCCGCCGCGGTTCGACGGCCCATGGACAGAGGCTACCTGATAAACCCAGACCTCCAGCGAGAAATATGGGCTCACCTCTTCTCCTCCATCCTCCACATAAACCCAGCACACTCTTCCCTCCTCCTCACCGAACCCCTCTTTACCCTTCCCTCTATTCAGCGTTCTATGGACGAGCTTGTCTTCGAAGATTTCAACTTTAAGTCCCTTTATGTGGCGGACTCACCCTCTCTGGTTCATCTCTACGAGGCAAGTCGAAGGCCCGAAGGTCTTGTCTCTAGAGCCCAGTGCAGTCTCGTCGTGGATTGTGGGTTTTCCTTCACGCACGCATCGCCTGTATTTCAGAACTTCACGTTGAATTACGCTGTGAAGAGAATCGATTTGGGTGGGAAGGCTTTGACCAATTATCTCAAGGAGTTGGTTTCTTTTCGGTCTGTTAATGTTATGGAGGAGACATTTATCATTGATGACGTTAAGGAAAAGCTCTGCTTTGTTTCCCTCAATGTACCCCGTGACCTCCAGATCGCGAGGAAGCCTGGAAGAGAAAATCTATTTAGATGCACATATGTCCTTCCGGATGGTGTTACGCACACAAAGGGTTTTGTTAAATATCCTGATCAAGCACATAGATATCTTACTTTGAATGATGATGCCACTTCTCCACCGCCAGCAGAAACAAAGGAGGATATAAGTCATCCAGAAATAGCCGAGAAACCTGAGGAGAGAAGAACTGATTTGATGAAAAATGAATTTGTCGTGACAAATGAACGCTTTCTTGTCCCAGAGATGATCTTTCATCCTGCTGATTTAGGAATGAACCAGGCTGGACTAGCAGAATGCATTGTACGAGCTATTAACTGCTGCCATCAACTACTCCACCCTGTACTCTATGAAAGCATCATTTTAACGGGTGGAAGCACCTTATTTCCTCAATTTGCTGAGAGATTAGAGAGGGAGCTCCGGCCTCTAGTTCCTGAGGACTATCATGTGAAGATAACTGCTCAAGAAGATCCCATATTAGGTGTTTGGCGTGGAGGATCGTTGTTGGCATCTAGTCCAGATTTTGAAGCAATGTGTGTGACCAAGTCTGAGTACGAGGAGCTTGGGTCTGCTAGATGTCGCAAGAGATTCTTTCATTGA 1320 0.4773 MSTNNVVVLDNGGGLIKAGLGGERDPSTVVPNCLYRPPSSKKWLHPNPVNPTTTATEVDLTSAAVRRPMDRGYLINPDLQREIWAHLFSSILHINPAHSSLLLTEPLFTLPSIQRSMDELVFEDFNFKSLYVADSPSLVHLYEASRRPEGLVSRAQCSLVVDCGFSFTHASPVFQNFTLNYAVKRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKEKLCFVSLNVPRDLQIARKPGRENLFRCTYVLPDGVTHTKGFVKYPDQAHRYLTLNDDATSPPPAETKEDISHPEIAEKPEERRTDLMKNEFVVTNERFLVPEMIFHPADLGMNQAGLAECIVRAINCCHQLLHPVLYESIILTGGSTLFPQFAERLERELRPLVPEDYHVKITAQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1136 439 Gene3D Actin; Chain A, domain 4 194 336 - -
Glsi02g1136 439 FunFam Putative actin-related protein 5 402 430 - -
Glsi02g1136 439 FunFam Actin-related protein 6 133 193 - -
Glsi02g1136 439 Gene3D - 7 430 - -
Glsi02g1136 439 SUPERFAMILY Actin-like ATPase domain 156 438 IPR043129 -
Glsi02g1136 439 Gene3D Actin; Chain A, domain 2 34 68 - -
Glsi02g1136 439 SUPERFAMILY Actin-like ATPase domain 2 139 IPR043129 -
Glsi02g1136 439 MobiDBLite consensus disorder prediction 275 295 - -
Glsi02g1136 439 PANTHER ACTIN 7 430 IPR004000 -
Glsi02g1136 439 Pfam Actin 3 438 IPR004000 -
Glsi02g1136 439 SMART actin_3 4 438 IPR004000 -
Glsi02g1136 439 FunFam ARP5 actin-related protein 5 homolog 335 401 - -
Glsi02g1136 439 Gene3D - 133 404 - -
Glsi02g1136 439 CDD NBD_sugar-kinase_HSP70_actin 7 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1136 Glsi-ChrGlsi02 7875829 7878307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1136 7 438 Cytoskeleton Gene Families AT3G18780 27.626 7.20e-52 177