Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1127 ATGTCGAGCTGCAGCATCGATGTTGGTCCTGAGCAACTCTGCTATATCCCCTGCAAATTTTGCAACATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTGTTTGACATAGTGACCGTTCGATGTGGGCATTGCACAAATCTATGGTCCGTGAACATGGCGGCCGCGTTTCAGTCACTGTCATGGCAAGACGTTCAGGCTTCTGGGTTCTCCAATCCAGAACATAGGATTGAGGCAGGTTCCTCTTCAAAATGCAACAACAGGATTGCAATGCGAGCACCCATAACCACAAATGTAACTGAGGAAAGGGTTGTGAATCGGCCTCCCGAGAAGAGGCAGCGGGTACCTTCTGCATATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCCAATAACCCAGATATCAGCCACAGGGAAGCTTTCAGTACAGCTGCCAAGAATTGGGCACATTTCCCTCATATTCATTTCGGGCTGATGTTGGAGACCAATAATCAAGCTAAGATGGAGAATGGATCGGAGAAGCATTTAATGTCAAGGGCTGCACTATTAAACAAATGA 564 0.4681 MSSCSIDVGPEQLCYIPCKFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQASGFSNPEHRIEAGSSSKCNNRIAMRAPITTNVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQAKMENGSEKHLMSRAALLNK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1127 187 CDD HMG-box_SF 114 150 - -
Glsi02g1127 187 FunFam Axial regulator YABBY 105 176 - -
Glsi02g1127 187 PANTHER PROTEIN YABBY 6-RELATED 1 170 IPR006780 GO:0007275
Glsi02g1127 187 Pfam YABBY protein 10 160 IPR006780 GO:0007275
Glsi02g1127 187 Gene3D High mobility group box domain 99 157 IPR036910 -
Glsi02g1127 187 SUPERFAMILY HMG-box 104 153 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1127 Glsi-ChrGlsi02 7725925 7729100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1127 8 170 C2C2-YABBY Transcription Factor Family AT2G26580 76.074 8.43e-90 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Glsi02g1127 YABBY 2.7e-69 CL0114