Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1123 ATGAAGAATGTAAGGAGAAAGGTTGGGAAGTATGAGGTGGGTCGAACCATTGGGGAAGGCACCTTCGCCAAGGTTAAATTTGCCAAAAACACAGAGACAGGGGAGAGTGTGGCTATTAAAGTGATGGCTAAGAGCACCATTCTCAAACACAAAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGGTTGCATGAGGTTTTGGCCAGCCCTACCAAGATTTACATAATTCTTGAGTTTGTAATGGGAGGAGAACTATATGATAAAATTGCTCAGCAGGGGAAGCTTTCAGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGATGCTGTTGCTCATTGTCATAACAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAATCTTCTTCTTGACGCTTTTGGGAATTTGAAGGTTTCTGACTTTGGACTGAGTGCCTTGACTAAGCAGGGTGTTGGCCTCCTTCACACCATCTGTGGAACACCAAATTACGTTGCTCCTGAGGTGCTCAGCAATCTAGGTTATGATGGTGCAGGAGCAGATGTTTGGTCATGTGGAGTCATCCTCTATGTTCTAATGGCCGGATTTCTTCCTTTTGAGGAGGCAGACCTTCCAACCTTGTTCAAAAGGATTAATGCTGCAGAATTCACTTGCCCAATTTGGTTTGCTGCTGGGGCGAAGACATTATTACATAAAATACTGGATCCAAAGCCTAAAACACGTATTCAAATTAAAGAAATAAGAAAAGACCCATGGTTCCAGAGAAATTATGTTCCTGTTAAACTCAGGGATGAGGAAGTGAACTTGGATGATGTTCAGGCTGTTTTTGATGATATCGAGGACAAGTATGTGGCTGAACAGTTGCAAAATACTGACAGAGGTCCTTTGACAATGAATGCATTTGAGATGATAACCTTATCACAAGGGTTGAATCTATCGGCACTATTTGACAGGCATCAGGATTATGTAAAGCGGCAAACTCGTTTTGTTTCTCGTGAACCAGCAAAAGCTATAACTACATCTATTGAAGCTATTGCAGAGTCAGTGGGCCTTAAGGTCCATTCTCGCAATTACAAGATGAGACTTGAAGAAGTATCTGCAAATAAGGCTGGACAACTTGCAGTGGTTTTGGAGGTTTTTGAAGTTGCACCATCCCTTTTCATGGTAGATGTTCGAAAAGCTGCTGGGGATACTCTTAAATATCACAAGTTTTACAAGAATCTTTGTGAAAGACTAGGAAACATTATTTGGAGACCAGCAGAGGTCACTCCAAAACCTAGTATTCTTAGACAAAAGACTTGCTAA 1338 0.4103 MKNVRRKVGKYEVGRTIGEGTFAKVKFAKNTETGESVAIKVMAKSTILKHKMVEQIKREISIMKIVRHPNIVRLHEVLASPTKIYIILEFVMGGELYDKIAQQGKLSENESRRYFQQLIDAVAHCHNKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTKQGVGLLHTICGTPNYVAPEVLSNLGYDGAGADVWSCGVILYVLMAGFLPFEEADLPTLFKRINAAEFTCPIWFAAGAKTLLHKILDPKPKTRIQIKEIRKDPWFQRNYVPVKLRDEEVNLDDVQAVFDDIEDKYVAEQLQNTDRGPLTMNAFEMITLSQGLNLSALFDRHQDYVKRQTRFVSREPAKAITTSIEAIAESVGLKVHSRNYKMRLEEVSANKAGQLAVVLEVFEVAPSLFMVDVRKAAGDTLKYHKFYKNLCERLGNIIWRPAEVTPKPSILRQKTC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1123 445 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Glsi02g1123 445 CDD CIPK_C 310 423 - -
Glsi02g1123 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Glsi02g1123 445 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1123 445 SUPERFAMILY Protein kinase-like (PK-like) 8 276 IPR011009 -
Glsi02g1123 445 Gene3D Kinase associated domain 1, KA1 303 429 - -
Glsi02g1123 445 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Glsi02g1123 445 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Glsi02g1123 445 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1123 445 Pfam NAF domain 306 365 IPR004041 GO:0007165
Glsi02g1123 445 FunFam Non-specific serine/threonine protein kinase 303 429 - -
Glsi02g1123 445 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
Glsi02g1123 445 FunFam Non-specific serine/threonine protein kinase 4 304 - -
Glsi02g1123 445 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1123 445 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Glsi02g1123 445 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 418 - -
Glsi02g1123 445 Coils Coil 273 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1123 Glsi-ChrGlsi02 7659988 7668436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1123 6 371 CBL-interacting serine-threonine protein kinases AT5G35410 73.842 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi02g1123 Pkinase 2.1e-70 CL0016