Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1115 ATGGCGCAGATAGAAATAGATGGGCTCTCTTTGCTCTTAAACTCATTTGCTTCCCTCCCTCTATATCTACTCTTCCCACACACTCTGTTCATTCTGTACTTTCCTACGTTACTCACCATCTCAACACCAGAGATGGTGCATTCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCCGAAATTCGCCACCCTCTTCTGAAGAGAAGAGTGTGGTTAGGCACATTTGAAACAGCGGAAGAAGCAGCACGAGCCTATGATCAAGCTGCCATTTTGATGAGTGGCCGGAATGCGAAAACCAATTTCCCGATAATTCAAACTTCCGAAGGCGAACCAAAGACCGGTAAAACTGAAGATTGCGCAGCAACCCCACCAAAGGATCTGCAAGAAATCCTACACGCAAAGCTTAGAAAATGCAGCAAGGTACCCTCCCCTTCCATGACCTGCCTCAGGCTGGACCCTGAGAATTCTCATATTGGAGTCTGGCAGAAGCGCGCTGGGCAGCGCTCTGAATCCAACTGGGTCATGAGGGTTCAGCTGGGCAAGAAGAGGGATAGTAGTACCAATATTGAGGGTGAAGATCAAAGTCCTTCACCTTCTTCTTTGTCTGATCAGTCGACCCCATCAGTTATTGACGTCGGAGCAGAGATGGACGAAGAGGAGAGAATTGCCCTGCAAATGATAGAGGAACTTCTCAATAGGAACTGCCCTAGCCCTAGCACTTCTTCATTCAATGGCATAGAAGAAGGGGACGGCAGCTTTTTCCTTTAA 783 0.4802 MAQIEIDGLSLLLNSFASLPLYLLFPHTLFILYFPTLLTISTPEMVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIIQTSEGEPKTGKTEDCAATPPKDLQEILHAKLRKCSKVPSPSMTCLRLDPENSHIGVWQKRAGQRSESNWVMRVQLGKKRDSSTNIEGEDQSPSPSSLSDQSTPSVIDVGAEMDEEERIALQMIEELLNRNCPSPSTSSFNGIEEGDGSFFL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1115 260 MobiDBLite consensus disorder prediction 195 212 - -
Glsi02g1115 260 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Glsi02g1115 260 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Glsi02g1115 260 Gene3D AP2/ERF domain 49 109 IPR036955 GO:0003700|GO:0006355
Glsi02g1115 260 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Glsi02g1115 260 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Glsi02g1115 260 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Glsi02g1115 260 MobiDBLite consensus disorder prediction 240 260 - -
Glsi02g1115 260 MobiDBLite consensus disorder prediction 184 212 - -
Glsi02g1115 260 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Glsi02g1115 260 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 47 198 - -
Glsi02g1115 260 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Glsi02g1115 260 CDD AP2 49 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1115 Glsi-ChrGlsi02 7597969 7599305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1115 45 239 AP2-EREBP Transcription Factor Family AT1G15360 58.937 5.98e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g1115 AP2 1.2e-12 CL0081