Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1112 ATGGCTGCCATTGCATCAAATATCTACTTTCTTCTGCTCATATCTTTTGTAGGTGGAAGAGCTCAAACAGAACTTTCAAAGCAGATCAAACCTGGTTCTTCACTTTCCCCTACTACTCACCCCACCTTATGGTATTCCCCTTCACGTCAATTTGCATTTGGCTTTTATCATCAAGGCACTGGCTTTGCAGTTGGAATTTTGCTTGTGCGGACGAACAATAATACAGTTGTATGGACGGCGAATCGTGACGATCCTCCAGTCACCTCAAATGCAAAGCTAGAACTAACCAATGATGGTAAGCTTCTTCTGCAAACAGGGCAAGGACCAGATAAGCTTATTGCTAGTAATGCAACCGCTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTTGTTCTGTACAACAAAAATTCCAGTGTCATTTGGCAAAGTTTTGATTACCCTACTGATACTATCTTAGGGGATCAAATTCTACCTTCTGGGGGTCAATTGTTCTCTAGCTCATCAGAGACCAACCAATCCTCTGGACGGTTTCATCTCAAGATGCAGCTCGATGGAAACCTTGTTCTGTATCCAGTAAATACAGCTGACACAGTAGGGGATTCTTACTGGGCCACTAATACGTTAGGCCATGGTTCAAAATTTCATCTTTTCCTCAACAAAACAGGTCTTCTGCTTATCGTGAGTAGCAGTAGTTTTGACATTATCTCAACCGTGGCTAGTGCGCCATCTTCCGATAACAACATCGATGGTAACAATACAATTTATCGTGCAACTCTTGATTCTGATGGAGTTTTTCGACTGTATGCTCATTCTGACGATAAAAATGGCGAACACAGAGTTTCAGCAGTGTGGTCAGCGTTGCACGATGCTTGCAAGGTGGGGAGTTTCTGCGGGTTCAACAGCTATTGCACGTTCAATGACAACCAACCCTACTGCAATTGTCTTCCGGGAAGTGACTTTATAGATCCAAGTCAAGGGACTCTTGGCTGCAAAAGAAACTTTTCAGAAGCAGAATGTAGAGGTGGGAAAGAAAACGCAGCCTTGTATAGCATGTCCGCGATGGACAATATAATCTGGGGTGATCGTCCTTATGTCGAGGAAAAAATGGCAGAGGAAGAATGCTCATCTTCTTGTTTAAAGGATTGTAACTGTGGGGCTGCTCTTTATCGCGGTGGGATATGCAAGAAACAAGAGCTTCCATTGAGATATGTCAGACGGGATATGGCGGTGTCCTGGACAGCATTCTTAAAGACAGGAATTAGAGGCCTCAAAAGCTGGAATGCTACACTTCCTATACCTCAGCCTGACCAACCACCTCCAATAAAGACTACTAGTCACAAAGCAATTGTGCATATTATTCTTGTCATCTTGTGTTTTTCTTTTCTTTTATGTTCAACTATTGCTATCTCTAGCCATTTGATTTACAAGATTCGAGTTTTAAGGTACAAAAGGCTGGTGGAGATTGGAGATTTGGGTTTGGACGAAGGGTTCACTTTGCGGGTATTTTCATACAATGAGTTGAAAAGAGCAACAAATGGTTTCAAAGAAGAGTTGGGTAAGGGCTCTTTTGGATCAGTTTACAAAGGAACTTTAAACAAAGGCAGAAGACTTATTGCAGTGAAGAGGCTAGAGAAGTTAGTTGAAGAAGGAGAAAGGGAATTTCAAGCAGAAATGCGAGCCATTGGAAAAACCCACCACCGGAACTTGGTTCGCTTGCTAGGCTATTGTGCTGAGGATTCTAAAAGGCTTCTGGTCTACGAGTACATGAGCAATGGTTCTCTTGGAAAGCTTCTTTTTGGGGATACAATACGCCCAGATTGGGATGAGAGAAGAAGAATAGCACTGGACGTTGCAAGAGGGATCCTTTATCTCCATGAAGAATGTGAGGCCCCAACCATTCATTGTGACATAAAGCCTCAAAATATATTGATGGATGAGTTATGGACAGCCAAAATATCTGACTTTGGGCTAGCAAAACTTCTAATGCCAGATCAAACAAGGACCTTCACGGGGGTTAGAGGGACACGAGGATATTTGGCCCCAGAATGGCAGAAGAACACCCCAATATCAGTGAAGGCAGATGTTTATAGTTATGGAATAGTGCTGTTAGAAATTTTATTCTGCAGAAGAAACTTGGAAATTAACGTATCAGAACCAGAGCAGATACTTCTCTCCGGTTGGGTTTACAAGTGCTTTGATGCCAGAGAGTTAAATAAGATAGTTCCTGGGGAACCGGTGGATAAAAACCTGCTGGAGAATATGGTTAAAGTGGGATTATGGTGTATCCAAGATGAACCCTTTCTCAGGCCAACAATGAAGAGTGTGGTGTTGATGCTAGAAGGAGTTACTGATGTATCTATTCCTCCTTGTCCATCTGGTAATTCTATGTGA 2391 0.4262 MAAIASNIYFLLLISFVGGRAQTELSKQIKPGSSLSPTTHPTLWYSPSRQFAFGFYHQGTGFAVGILLVRTNNNTVVWTANRDDPPVTSNAKLELTNDGKLLLQTGQGPDKLIASNATASSASMLDSGNFVLYNKNSSVIWQSFDYPTDTILGDQILPSGGQLFSSSSETNQSSGRFHLKMQLDGNLVLYPVNTADTVGDSYWATNTLGHGSKFHLFLNKTGLLLIVSSSSFDIISTVASAPSSDNNIDGNNTIYRATLDSDGVFRLYAHSDDKNGEHRVSAVWSALHDACKVGSFCGFNSYCTFNDNQPYCNCLPGSDFIDPSQGTLGCKRNFSEAECRGGKENAALYSMSAMDNIIWGDRPYVEEKMAEEECSSSCLKDCNCGAALYRGGICKKQELPLRYVRRDMAVSWTAFLKTGIRGLKSWNATLPIPQPDQPPPIKTTSHKAIVHIILVILCFSFLLCSTIAISSHLIYKIRVLRYKRLVEIGDLGLDEGFTLRVFSYNELKRATNGFKEELGKGSFGSVYKGTLNKGRRLIAVKRLEKLVEEGEREFQAEMRAIGKTHHRNLVRLLGYCAEDSKRLLVYEYMSNGSLGKLLFGDTIRPDWDERRRIALDVARGILYLHEECEAPTIHCDIKPQNILMDELWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQKNTPISVKADVYSYGIVLLEILFCRRNLEINVSEPEQILLSGWVYKCFDARELNKIVPGEPVDKNLLENMVKVGLWCIQDEPFLRPTMKSVVLMLEGVTDVSIPPCPSGNSM 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1112 796 Gene3D Phosphorylase Kinase; domain 1 493 588 - -
Glsi02g1112 796 SUPERFAMILY Protein kinase-like (PK-like) 498 780 IPR011009 -
Glsi02g1112 796 SMART blect_4 148 279 IPR001480 -
Glsi02g1112 796 SMART blect_4 35 147 IPR001480 -
Glsi02g1112 796 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 791 - -
Glsi02g1112 796 Gene3D - 148 292 IPR036426 -
Glsi02g1112 796 ProSitePatterns Protein kinases ATP-binding region signature. 518 541 IPR017441 GO:0005524
Glsi02g1112 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 787 - -
Glsi02g1112 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 190 IPR036426 -
Glsi02g1112 796 ProSiteProfiles Bulb-type lectin domain profile. 26 145 IPR001480 -
Glsi02g1112 796 CDD STKc_IRAK 518 781 - -
Glsi02g1112 796 FunFam S-receptor-like serine/threonine-protein kinase 491 588 - -
Glsi02g1112 796 Pfam D-mannose binding lectin 75 153 IPR001480 -
Glsi02g1112 796 FunFam Serine/threonine-protein kinase 148 294 - -
Glsi02g1112 796 Coils Coil 540 560 - -
Glsi02g1112 796 PIRSF SRK 1 796 IPR024171 GO:0004674
Glsi02g1112 796 Gene3D - 22 145 IPR036426 -
Glsi02g1112 796 SMART serkin_6 512 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1112 796 FunFam Serine/threonine-protein kinase 24 146 - -
Glsi02g1112 796 FunFam Serine/threonine-protein kinase 147 280 - -
Glsi02g1112 796 Pfam S-locus glycoprotein domain 249 317 IPR000858 GO:0048544
Glsi02g1112 796 Pfam Protein kinase domain 515 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1112 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 168 271 IPR036426 -
Glsi02g1112 796 ProSiteProfiles Protein kinase domain profile. 512 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1112 796 Gene3D Transferase(Phosphotransferase) domain 1 589 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1112 Glsi-ChrGlsi02 7565659 7568049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1112 450 789 Receptor kinase-like Gene Family AT5G20050 37.875 4.41e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi02g1112 Pkinase 1.6e-48 CL0016