Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1110 ATGCCTGCCGTTGCATTAAATATATACTTTCTGCTGTTCATATCCTTTGTAGGTGGAGGATCTCAAAAAGAACTTCCAAACGATATAGCACTTGGTTCCTCACTTTCTTACCCCACTTCATGGTATTCCCCTTCCGGTTACTTTGAATTTGGTTTTTATCCCCTTCCGGGCAATGGCTATGCACTTGGAATTTTGCTGGTAGGAAAGAACGATTATACAATTGTGTGGACAGCAAATCGTGATGATCCTCCAGTCACCTCAAATGCAAAGCTACAGCTAACCCAGGGTGGTAAGCTGCTTTTGCAAAACGGGCATGGACAAGAAAAGCTTATTGCTAATGTAAACGCTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTTGTGCTATACAACAAAAATTCCAGAGTCATTTGGCAGAGTTTTGATCACCCAACTGATACTATCTTGGGGGGTCAAGTTCTTCCTACTGGGGTTCAATTGTTGTCTAGCTCATCAGAGACCAACCATTCATCTGGAAGGTTTCGTCTCAAGATGCAGGACGATGGAAACCTTGTTCTTTATCCAGCAAATACAGGCGACAGTTCAAATAATGCTTACTGGGCGTCTGGTACTTACGTCTACAATCTCCAATATCATCTGAACCTCACCAAAGCAGGTTCTCTGCTTATCGTAAATAACAGTAATTCAGAGACGATCAAGATTTTGAGTGATTCGCCATCTTTTTCTACCTACAGCATATATCGTGCAACCCTGGATTCTGATGGAGTTTTTCGGCTGTATCTTCACGATGTTGGCTATGGAGTAGTTTCAATTCTTTGGTCTTCATTGTCCGGTGTGTGCACGGTGAAGAATTTCTGTGGGTTCAACAGCTACTGCACATACAGTATTAACAGCCAAGTCAATTGCACTTGTATTCAGGGGACTGACTTTATAGATCCAAGTCAAACCACTCTTGGCTGCAAAAAGAACTTTTCAGATGCAGAATGTAGAGGTGGGAAAGAAAATGAAACCTTGTATCGCTTGTCCACAGTGGACAATATAGACTGGGAACATCGACCTTATTTGCAGGCAGTGATGTCGCTGAGACAATGCCGACTTTCTTGTTTGGAGGATTGTAACTGTGGTGTTGCCCTTTATGAAGATGGGATCTGCACGAAAGAAGCGCTTCCATTAAGATATGTGATGAAGACAAGGTATCAGCTATCGGTGCCCACGCAGGTGTTCTTGAAGGTGGGAACTAGAAGCCCGAAAAGCTGGAATAACACACCTCCTATTGCTAAGCCTGACCAACCGCCCCCAATCAGGACTAATAGTAACAGAGCAATTGTGCTGATTATTCTTGTTATCTTGGGTTTTGCTTTTCTTTTCTGTTCAACTATTGCAATTTCTAGCCACTTGATTTACAAGATTCGGGTTTTGAGGTACCAAAGATTGCTGGAGACTGGAGATTTGGGCTTGAACGTAGGGGTCACTCTGAGGGTATTTTCATACAATGAACTGAAAAGAGCAACAAATGGTTTCAAAGAAGAGTTGGGTAAGGGTTCTTTCGGAGCAGTTTACAAAGGAACTATATGCAAAGGAAGAACACTTATTGCGGTAAAGAGATTGGAGAAGTTGATCGAAGAAGGAGAGAGAGAATTTCAAGCAGAAATGCGAGCCATCGGAAAAGCCCACCACAGAAACTTGGTCCGCTTGCTGGGCTATTGTGCTGAGGGTTCTAACAGGCTTCTTGTTTATGAGTACATGAGCAATGGTTCCCTTGGGAATCTTCTTTTTGGGGATACAAGACGTCCAGACTGGGATGAGAAAAGAAGGATAGCATTGAACGTTGCAAGAGGTATCCTCTATCTCCATGAAGAGTGTGAGGCTCCAATCATTCACTGTGACATAAAGCCTCAAAACATACTGATGGACGAGTTTTGGACAGCCAAAATATCTGACTTTGGCCTAGCAAAACTACTGATGCCAGATCAAACAAGGACCTTCACCGGGGTTAGAGGGACAAGAGGATACGTGGCCCCGGAATGGCAGAAGAGCACCCCAATAACTGTGAAGGCAGATGTTTATAGCTACGGCATAATGCTATTGGAAATTGTGTTTTGTAGAAGACACTTGGAAGTTAACATATCAGAACCAGAGCAGATTGTTCTATCCAGCTGGATCTACAGGTGCTTTAATGCCAGAGAGTTAAATAAGTTTGTTCCTGGGGAACCGGTGGATGAAAACCTGCTGGAGAATATGGTTAAAGTGGGATTATGGTGTATCCAAGATGAACCCTTTCTCAGGCCAACAATGAAGAGTGTGGTGTTGATGCTAGAAGGAGTTACGGATGTCGCTATTCCTCCTTGTCCATCAGCTAATTTTATGTGA 2370 0.4325 MPAVALNIYFLLFISFVGGGSQKELPNDIALGSSLSYPTSWYSPSGYFEFGFYPLPGNGYALGILLVGKNDYTIVWTANRDDPPVTSNAKLQLTQGGKLLLQNGHGQEKLIANVNASSASMLDSGNFVLYNKNSRVIWQSFDHPTDTILGGQVLPTGVQLLSSSSETNHSSGRFRLKMQDDGNLVLYPANTGDSSNNAYWASGTYVYNLQYHLNLTKAGSLLIVNNSNSETIKILSDSPSFSTYSIYRATLDSDGVFRLYLHDVGYGVVSILWSSLSGVCTVKNFCGFNSYCTYSINSQVNCTCIQGTDFIDPSQTTLGCKKNFSDAECRGGKENETLYRLSTVDNIDWEHRPYLQAVMSLRQCRLSCLEDCNCGVALYEDGICTKEALPLRYVMKTRYQLSVPTQVFLKVGTRSPKSWNNTPPIAKPDQPPPIRTNSNRAIVLIILVILGFAFLFCSTIAISSHLIYKIRVLRYQRLLETGDLGLNVGVTLRVFSYNELKRATNGFKEELGKGSFGAVYKGTICKGRTLIAVKRLEKLIEEGEREFQAEMRAIGKAHHRNLVRLLGYCAEGSNRLLVYEYMSNGSLGNLLFGDTRRPDWDEKRRIALNVARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYVAPEWQKSTPITVKADVYSYGIMLLEIVFCRRHLEVNISEPEQIVLSSWIYRCFNARELNKFVPGEPVDENLLENMVKVGLWCIQDEPFLRPTMKSVVLMLEGVTDVAIPPCPSANFM 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1110 789 SMART serkin_6 505 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1110 789 Pfam Protein kinase domain 508 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1110 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Glsi02g1110 789 SUPERFAMILY alpha-D-mannose-specific plant lectins 167 265 IPR036426 -
Glsi02g1110 789 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 784 - -
Glsi02g1110 789 ProSiteProfiles Bulb-type lectin domain profile. 26 142 IPR001480 -
Glsi02g1110 789 Gene3D Phosphorylase Kinase; domain 1 485 581 - -
Glsi02g1110 789 SMART blect_4 145 279 IPR001480 -
Glsi02g1110 789 SMART blect_4 32 144 IPR001480 -
Glsi02g1110 789 Gene3D - 22 143 IPR036426 -
Glsi02g1110 789 ProSitePatterns Protein kinases ATP-binding region signature. 511 534 IPR017441 GO:0005524
Glsi02g1110 789 Gene3D Transferase(Phosphotransferase) domain 1 582 780 - -
Glsi02g1110 789 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 161 IPR036426 -
Glsi02g1110 789 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 780 - -
Glsi02g1110 789 SUPERFAMILY Protein kinase-like (PK-like) 490 773 IPR011009 -
Glsi02g1110 789 Coils Coil 533 553 - -
Glsi02g1110 789 CDD B_lectin 42 144 IPR001480 -
Glsi02g1110 789 Gene3D - 152 277 IPR036426 -
Glsi02g1110 789 PIRSF SRK 1 789 IPR024171 GO:0004674
Glsi02g1110 789 Pfam D-mannose binding lectin 73 153 IPR001480 -
Glsi02g1110 789 FunFam Serine/threonine-protein kinase 144 268 - -
Glsi02g1110 789 ProSiteProfiles Protein kinase domain profile. 505 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1110 789 FunFam S-receptor-like serine/threonine-protein kinase 479 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1110 Glsi-ChrGlsi02 7539393 7541762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1110 422 778 Receptor kinase-like Gene Family AT1G56120 40.489 1.13e-65 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi02g1110 Pkinase 7.2e-48 CL0016