Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1108 ATGCCTGCCGTTGCATTAAATATATACTTTCTTCTGTTCATATCCTTTGTAGGTGGAGGATCTCAAAAAGAACTTCCAAACGATATAGCACTTGGTTCCTCACTTTCTTACCCCACTTCATGGTATTCCCCTTCCGGTTACTTTGAATTTGGTTTTTATCCCCTTCCGGGCAATGGCTATGCACTTGGAATTTTGCTGGTAGGAAAGAACGATTATACAATTGTGTGGACAGCAAATCGTGATGATCCTCCAGTCACCTCAAATGCAAAGCTACAGCTAACCCAGGGTGGTAAGCTGCTTTTGCAAAACGGGCATGGACAAGAAAAGCTTATTGCTAATGTAAACGCTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTCGTGCTATACAACAAAAATTCCAGAGTCATTTGGCAGAGTTTTGATCACCCAACTGATACTATCTTGGGGGGTCAAGTTCTTCCTACTGGGGTTCAATTGTTGTCTAGCTCATCAGAGACCAACCATTCATCTGGAAGGTTTCGTCTCAAGATGCAGGACGATGGAAACCTTGTTCTTTATCCAGCAAATACTGGCGACGGTTCAAATAATGCTTACTGGGCGTCTGGTACTCACGTCAACAATCTCCAATATCATCTGAACCTCACCAAAGCAGGTTCTCTGCTGATCGTAAAAAACAGTAATTCAGAGACGATCAAGATTTTGAGTGATTCGCCATCTTTTTCTACCTACATCATATATCGTGCAACCCTGGATTCTGATGGAGTTTTTCGGCTGTATTTTCACGATGCTGGCCCTGGAGTATTTTCAATTCTGTGGTCTTCATTGTCCGATGCTTGCACGGTGAAGAGTTGTGGGTTGAACAGCTACTGCACATACAGTATTAACAGCCAAGTCAATTGCACTTGTATTCAGGGGACTGACTTTATAGATCCAAGTCAAACCACTCTTGGCTGCAAAAGGAACTTTTCAGTTGCAGAATGTAGAGGTAGGAAAGAAAATGCAACCTTGTATCACTTGTCCACAGTGGACAATATAGACTGGGAACATCGACCTTATTTGCAGGCAGTGATGTCGCTGAGACAATGCCGACTTTCTTGTTTGGAGGATTGTAACTGTGGTGTTGGCCTTTATGAATATGGGATCTGCACGAAAGAAGCGCTTCCATTAAGATATGTGATGATGACAAGGTATCAGCAATCGGTGCCCACAAAGGTGTTCTTGAAGGTGGGAACTAGAAGCCCGAAAAGCTGGAATAACACACCTCCTATTGCTAAGCCTGACCAATCGCCCCCAATCATGACTACTAGTAACAGAGCAATTGTGCTGATTATTCTTGTTATCTTGGGTTTTTCTTTTCTTTTCTCTTCAACTATTGCAATTTCTAGCCACTTGATTTACAAGATTCGGGTTTTGAGGTACCAAAGATTGCTGGAGACTGGAGATTTGGGCTTGAAAGAAGGTGTCACTCTGAGGGTATTTTCATACAATGAGCTGAAGAGAGCAACAAATGGTTTCAAAGAAGAGTTGGGTAAGGGCTCTTTTGGAGCAGTTTACAAAGGAACTATTTGCAAAGGAAGAACACTTATTGCGGTAAAGAGACTGGAGAAGTTGATCGAAGAAGGAGAGAGAGAATTTCAAGCAGAAATGCGAGCCATCGGAAAAACCCACCACAGAAATTTGGTTCGCTTGCTGGGCTATTGTGCTGAGGGTTCTAACAGGCTTCTTGTTTATGAGTACATGAGCAATGGTTCCCTTGGGAATCTTCTTTTTGGGGATACAAGACGTCCAGACTGGGATGAGAGAAGAAGGATAGCATTGGACGTAGCAAGAGGGATCCTCTATCTCCATGAAGAGTGTGAGGCTCCAATCATTCACTGTGACATAAAGCCTCAAAACATACTGATGGACGAGTTTTGGACAGCCAAAATATCTGACTTTGGCCTAGCAAAACTACTGATGCCAGATCAAACAAGGACCTTCACCGGGGTCAGAGGGACAAGAGGATACGTGGCCCCGGAATGGCAGAAGAGCACCCCAATAACTGTAAAGGCAGATGTTTATAGCTACGGCATAATGCTATTGGAAATTGTGTTTTGTAGAAGACACTTGGAAGTTAACATATCAGAACCAGAGCAGATTGTTCTATCCAGCTGGATCTACAAGTGCTTTAATGCCAGAGAGTTAAATAAGCTTGTTCCTGGGGAACCGGTGGATGAAAACCTGCTGGAGAATATGGTTAAAGTGGGATTATGGTGTATCCAAGATGAACCCTTTCTCAGGCCAACAATGAAGAGTGTGGTGTTGATGCTAGAAGGAGTTACTGATGTCGCTATTCCTCCCTGTCCATCAGCTAATTTTATGTGA 2367 0.4326 MPAVALNIYFLLFISFVGGGSQKELPNDIALGSSLSYPTSWYSPSGYFEFGFYPLPGNGYALGILLVGKNDYTIVWTANRDDPPVTSNAKLQLTQGGKLLLQNGHGQEKLIANVNASSASMLDSGNFVLYNKNSRVIWQSFDHPTDTILGGQVLPTGVQLLSSSSETNHSSGRFRLKMQDDGNLVLYPANTGDGSNNAYWASGTHVNNLQYHLNLTKAGSLLIVKNSNSETIKILSDSPSFSTYIIYRATLDSDGVFRLYFHDAGPGVFSILWSSLSDACTVKSCGLNSYCTYSINSQVNCTCIQGTDFIDPSQTTLGCKRNFSVAECRGRKENATLYHLSTVDNIDWEHRPYLQAVMSLRQCRLSCLEDCNCGVGLYEYGICTKEALPLRYVMMTRYQQSVPTKVFLKVGTRSPKSWNNTPPIAKPDQSPPIMTTSNRAIVLIILVILGFSFLFSSTIAISSHLIYKIRVLRYQRLLETGDLGLKEGVTLRVFSYNELKRATNGFKEELGKGSFGAVYKGTICKGRTLIAVKRLEKLIEEGEREFQAEMRAIGKTHHRNLVRLLGYCAEGSNRLLVYEYMSNGSLGNLLFGDTRRPDWDERRRIALDVARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYVAPEWQKSTPITVKADVYSYGIMLLEIVFCRRHLEVNISEPEQIVLSSWIYKCFNARELNKLVPGEPVDENLLENMVKVGLWCIQDEPFLRPTMKSVVLMLEGVTDVAIPPCPSANFM 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1108 788 FunFam Serine/threonine-protein kinase 144 267 - -
Glsi02g1108 788 SMART blect_4 145 279 IPR001480 -
Glsi02g1108 788 SMART blect_4 32 144 IPR001480 -
Glsi02g1108 788 ProSiteProfiles Protein kinase domain profile. 504 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1108 788 FunFam Serine/threonine-protein kinase 145 283 - -
Glsi02g1108 788 Gene3D - 22 143 IPR036426 -
Glsi02g1108 788 ProSiteProfiles Bulb-type lectin domain profile. 26 142 IPR001480 -
Glsi02g1108 788 CDD STKc_IRAK 510 773 - -
Glsi02g1108 788 Pfam Protein kinase domain 507 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1108 788 PIRSF SRK 1 788 IPR024171 GO:0004674
Glsi02g1108 788 ProSitePatterns Protein kinases ATP-binding region signature. 510 533 IPR017441 GO:0005524
Glsi02g1108 788 SMART serkin_6 504 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1108 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 167 267 IPR036426 -
Glsi02g1108 788 FunFam S-receptor-like serine/threonine-protein kinase 478 580 - -
Glsi02g1108 788 Gene3D Phosphorylase Kinase; domain 1 484 580 - -
Glsi02g1108 788 Gene3D - 155 277 IPR036426 -
Glsi02g1108 788 Coils Coil 532 552 - -
Glsi02g1108 788 Pfam D-mannose binding lectin 73 153 IPR001480 -
Glsi02g1108 788 ProSiteProfiles Bulb-type lectin domain profile. 145 272 IPR001480 -
Glsi02g1108 788 SUPERFAMILY Protein kinase-like (PK-like) 490 772 IPR011009 -
Glsi02g1108 788 CDD B_lectin 42 144 IPR001480 -
Glsi02g1108 788 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 581 779 - -
Glsi02g1108 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 187 IPR036426 -
Glsi02g1108 788 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 783 - -
Glsi02g1108 788 Gene3D Transferase(Phosphotransferase) domain 1 581 779 - -
Glsi02g1108 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1108 Glsi-ChrGlsi02 7508288 7510654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1108 494 781 Receptor kinase-like Gene Family AT5G20050 40.453 4.93e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi02g1108 Pkinase 4.9e-48 CL0016