Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1093 ATGGATAGCAACAAGGACGATGCGTTGAAATGCTTGAAAATTGGGAAAGAGGCATTAGAAGATGGGGATCGGGCCCGCGCTTTGAAATTCGTGACGAAAGCTCGTCGTCTTGACCCGACTTTGCCCGTCGACGATCTTTTGGAAGCAATAGAGAAGGATACAAGTGCCCAATCATCGCCGGCGACCGCCAATGGACCATCTGTGAATTCTTCATCGAATCCCTCGGATCAGCCTTCTATTCGCCGAAGGGTTTCGTCAGCAGGATCTTCATCGTCTTCGTCATCAGTTACATATACGGAGGAGCAAATTACGATAGTCAGAGAAGTAAGGGGGAAGAAGAATTATTATGACATTTTGGGATTGGAGAAGAGTTGCACAGTCGAGGATGTACGAAAAGCGTACAGAAAGTTGTCTTTGAAGGTTCATCCTGATAAAAACAAAGCTCCGGGTGCTGAGGAAGCGTTTAAGGCTGTGTCCAAGGCATTTCAGTGTCTTAGTAATGAAGAGAGTCGAAAAAAGTATGATCTTGTCGGAGATGATGAATCCATTTACGAGAGACGCGCGGCCAGGCAGGGGCCACGGGCGTACAATGGGTTTTACGAGGCTGATATTGATGCAGAGGAAATATTTAGGAATTTCTTCTATGGTGGGATGGCTCCTGCAACTGCTTTTGGTGGCTTCAATTTTGGACCAGGGATGGCTCATAGGCCGGGTGAACAAGGGTCTGGCGGCTTTAACGTTCGCGCTTTTATTCAGCTGCTTCCCGTTCTGCTTATTGTGCTTTTGAACTTCTTACCGTCTTCAGATCCTATCTATGTACTTTCTCGGACCTATCCATATGAATACCGGTTTACTACACCAAAGGGTGTCAATTATTATGTCAAGTCTACCAATTTTGCTCAAGATTACCCACCAAATAGCCATGAGCGCACAGTAATTGAAGATAGGGTTGAGAGGGAATACTTCAGCATTCTTTCACAGAACTGTCGGCTTGAGTTGCAGCGTCGACAATGGGGATATATCCAGGAAACACCTCACTGTGACATGCTTCGGAAGTTTGATACAGTGAAGTGA 1074 0.4609 MDSNKDDALKCLKIGKEALEDGDRARALKFVTKARRLDPTLPVDDLLEAIEKDTSAQSSPATANGPSVNSSSNPSDQPSIRRRVSSAGSSSSSSSVTYTEEQITIVREVRGKKNYYDILGLEKSCTVEDVRKAYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESRKKYDLVGDDESIYERRAARQGPRAYNGFYEADIDAEEIFRNFFYGGMAPATAFGGFNFGPGMAHRPGEQGSGGFNVRAFIQLLPVLLIVLLNFLPSSDPIYVLSRTYPYEYRFTTPKGVNYYVKSTNFAQDYPPNSHERTVIEDRVEREYFSILSQNCRLELQRRQWGYIQETPHCDMLRKFDTVK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1093 357 FunFam Chaperone protein dnaJ 49 110 225 - -
Glsi02g1093 357 MobiDBLite consensus disorder prediction 52 97 - -
Glsi02g1093 357 Gene3D DnaJ domain 111 223 IPR036869 -
Glsi02g1093 357 Pfam DnaJ domain 114 175 IPR001623 -
Glsi02g1093 357 SUPERFAMILY Chaperone J-domain 111 230 IPR036869 -
Glsi02g1093 357 PANTHER AT29763P-RELATED 1 352 - -
Glsi02g1093 357 ProSiteProfiles dnaJ domain profile. 114 178 IPR001623 -
Glsi02g1093 357 PRINTS DnaJ domain signature 150 170 IPR001623 -
Glsi02g1093 357 PRINTS DnaJ domain signature 116 134 IPR001623 -
Glsi02g1093 357 PRINTS DnaJ domain signature 134 149 IPR001623 -
Glsi02g1093 357 ProSitePatterns Nt-dnaJ domain signature. 155 174 IPR018253 -
Glsi02g1093 357 MobiDBLite consensus disorder prediction 48 97 - -
Glsi02g1093 357 CDD DnaJ 114 167 IPR001623 -
Glsi02g1093 357 SMART dnaj_3 113 170 IPR001623 -
Glsi02g1093 357 Pfam Domain of unknown function (DUF1977) 266 337 IPR015399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1093 Glsi-ChrGlsi02 7313112 7314185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1093 109 186 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.585 3.41e-09 55.8