Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1088 ATGGCATGGTTTGATGCTGGTAACAACTTGGCTCAGAAGCCGAGTCGCTCTTCTCGACCCAGTTACGTTCCTCCACATTACAGGAACAATGGGATGTCCACTTTCAACAACGCAAACTCATTTGTGTCCTCTAATGAGTCAACTCAGTCTGGGTTCGTCCCTTTTAACCGTTCTGGTGCTAGACAACAATCAATGGGCGGTCTGAGTAATGGTTGTTTGGGTAGCCGAGGTCGCGGTCGAGGCCCGAGGTTTGCTTGCCCAGAAGAGACCGATGAGTCAAGCCTTTATTTGAATCGTAGCGAGTTTGGTATTTCTGAAAAGTTCGCTGGTCTACAGGTGATTGAGGATGATACAAATGTTGGTGATAGAAATTTTGATGCATACGAAGATATCCCAGTGGAGGCTAGTGGCTCAGACATACCCCCACCTGTCAATGCCTTCGCAGAAATTGACTTGAACAAGGATTTGAGCAAGAATATCAAGCGTTGCAAGTACGTCAAACCCACCCCCATTCAGTGTCATGCAATACCCATTGCCATTGCAGGCCGTGACCTGATGGCCTGTGCGCAGACCGGGTCAGGGAAGACTGCAGCGTTCTGTTTCCCCATTATATCTGGGGTTTTGAAGGATCGTTCTGGGTTTTTGGCGACCCCTCGTGGAGGCAGGATTGCATATCCTACTGCGCTTATCATGTCTCCAACTAGGGAGTTGTCATGTCAGATACATGATGAAGCCAAGAAGTTCGCTTATCAGACCGGAGTGAAGGTTGTTGCTGCATATGGTGGAGCATCGATTGTTCAGCAGTTACGCAATTTAGAAAGAGGAGTGGATATCTTAGTTTCAACTCCTGGGCGTTTGGTAGATATGATTGAGAGAGGAAGGGTTTCACTTAAGAGAATAAAATTTCTTGCTCTGGATGAGGCGGATCGTATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGACATGCCTCCGCCAGGTGCTAGACAAACGATGCTTTTCAGTGCTACATTCCCGGATGATATACAGAAGCTTGCAGCGGACTTTCTTTCAAACTACATATTCCTAGCTGTTGGAAGAGTTGGTTCCAGCACTGAACTGATTGAACAGAAAGTTGAACTAGTTCAGGATATTGACAAAAGAAACCATCTTGTGGATATTCTCCGTTCTCATAGGCAAGCTTTGACTCTAGTTTTCGTTGAAACTAAAAGAGGAGCAGATGCTTTAGAAAACTGGCTGTGGGCAAAAGGCTTTCCAGCCATCGCGATACACGGTGACAAAGTTCAAATGGTTAGCTTCTTAGAGAGGGAACGAGCTTTAAGATCTTTCAAAAGTGGTGCTACTCCTATTTTGGTTGCCACTGATGTTGCTTCAAGAGGTCTGGACATACCTCGTGTGGCTCATGTTATCAATTTTGACTTGCCAAAGGACATAGATAACTACGTTCACAGGATTGGCCGAACTGGTCGTGCTGGTAAGTCAGGTTTGGCCACTGCCTTCTTCAGCGACAAGAACATCCCTCTTGCAAAGTCTCTTGTTGAACTCATGCAGGAGGCAAACCAGGAAGTTCCCTCTTGGCTCTGCCAATATGCTGCCGGTGACAGTTCAGCAGCTAGTACTAATCATAGCAGACGGGGTCAGCGGTGTGGAAGTGGCAACTATGGGGGCCGTGACTTTCGAAGTATTGCTGAACCTGAGGTGGAGAATGACAACTACTTCAGTACTCATAAGGATGCAGATTATGCAGTGGACTCTTGCACCGATGCCTCTTATGGCATCACAAACTCTTCCAGTGATTCTTCTTCTTATGATATAACAAAAACAGTTCCTGCTACTAATTACCATAACATTGATGCTAACACTGGTTTTTATGGAGCTGAGAATACTGGGGATGGGCCTACTGGTTATGTATCTGTTGTTGCCACTGGATGGGACTAG 1956 0.4622 MAWFDAGNNLAQKPSRSSRPSYVPPHYRNNGMSTFNNANSFVSSNESTQSGFVPFNRSGARQQSMGGLSNGCLGSRGRGRGPRFACPEETDESSLYLNRSEFGISEKFAGLQVIEDDTNVGDRNFDAYEDIPVEASGSDIPPPVNAFAEIDLNKDLSKNIKRCKYVKPTPIQCHAIPIAIAGRDLMACAQTGSGKTAAFCFPIISGVLKDRSGFLATPRGGRIAYPTALIMSPTRELSCQIHDEAKKFAYQTGVKVVAAYGGASIVQQLRNLERGVDILVSTPGRLVDMIERGRVSLKRIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPDDIQKLAADFLSNYIFLAVGRVGSSTELIEQKVELVQDIDKRNHLVDILRSHRQALTLVFVETKRGADALENWLWAKGFPAIAIHGDKVQMVSFLERERALRSFKSGATPILVATDVASRGLDIPRVAHVINFDLPKDIDNYVHRIGRTGRAGKSGLATAFFSDKNIPLAKSLVELMQEANQEVPSWLCQYAAGDSSAASTNHSRRGQRCGSGNYGGRDFRSIAEPEVENDNYFSTHKDADYAVDSCTDASYGITNSSSDSSSYDITKTVPATNYHNIDANTGFYGAENTGDGPTGYVSVVATGWD 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1088 651 CDD DEADc_DDX3_DDX4 147 368 IPR044763 GO:0003724|GO:0005524
Glsi02g1088 651 Pfam DEAD/DEAH box helicase 169 351 IPR011545 GO:0003676|GO:0005524
Glsi02g1088 651 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 537 - -
Glsi02g1088 651 Gene3D - 110 364 IPR027417 -
Glsi02g1088 651 CDD SF2_C_DEAD 374 507 - -
Glsi02g1088 651 Pfam Helicase conserved C-terminal domain 385 498 IPR001650 -
Glsi02g1088 651 SMART helicmild6 413 498 IPR001650 -
Glsi02g1088 651 FunFam Probable ATP-dependent RNA helicase DDX4 112 364 - -
Glsi02g1088 651 FunFam ATP-dependent RNA helicase RhlB 365 541 - -
Glsi02g1088 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 515 IPR027417 -
Glsi02g1088 651 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Glsi02g1088 651 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 537 IPR001650 -
Glsi02g1088 651 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 362 IPR014001 -
Glsi02g1088 651 MobiDBLite consensus disorder prediction 10 30 - -
Glsi02g1088 651 Gene3D - 365 540 IPR027417 -
Glsi02g1088 651 MobiDBLite consensus disorder prediction 1 30 - -
Glsi02g1088 651 SMART ultradead3 164 377 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1088 Glsi-ChrGlsi02 7288296 7291489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1088 127 530 Eukaryotic Initiation Factors Gene Family AT3G19760 31.605 9.97e-61 206