Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1077 ATGGCTACTTTTTTCAAGAGGTTGGCGAGAGCCACTCCGATTGCATCCGCAAATGCCTTTAATGGCCAATACAACTCCACTTACAGTCATTTCCCGGTGCCATTTGGTGCAATTGCGGCAATTTCCGGTGGTCTCTCTTACTTTTATTACTTTTCCTCACCCAACCTGGTTCATTTAGAAGAATTCAAAGAAGACAAAAGTCAAAACATTGCTCTCAATCCAGATAAATGGATCCAATTTAAGTTGCAAGACACCGCAAGGGTTAGTCACAATACCCACTTATTCAGGTTTTCATTTGATCCCACTAGAAAGTTGGGTTTGGATGTTGCTTCTTGCATTCTTACAAGGGCTCCATTGGGACAGGATGCTGAAGGAAAACCAAAATATGTCATAATAGCCCCAGTATGGTATACTCCTATATCAGATCCAGAATCTAAGGGATACATTGATTTGTTAATCAAGGTGTATCCTGAAGGAAAAATGAATCAGCATTTCGCAAGCTTAAAACCAGGCGATGTAGTTGAAGTGAAAGGGCCCATTGAAAAGCTCAGATATACTCCCAATATGAAGAAGCATATTGGCATGATTGCTGGTGGCACAGGAATTACTCCAATGCTTCAAGTAATTGAGGCTATATTGAAGAACCCTGATGACAAAAGTCAGATATCATTGCTTTATGCTAATGTCTCCCCAGATGACATACTGCTTAAACAGAAGCTTGACATTCTAGCAGCTGGCCATCCCAACTTAAAGATATTCTACACTGTTGATAATCCTACCAAGAATTGGAGAGGAGGTGCGGGCTACATATCAAAGGATATGGTTGTGAAAGGCTTACCCAGTCCTAGTGATGATACTCTTATTTTTCTTCAGTTGATTATAGTCTTTGAAGGTTCAGGAGATGGATTATCGTTATGTGTGGACGGACCCCCCGGGATGATGAAACATGTATCTGGTGACAAGGCCAAGGATCGGTCACAAGGAAAGCTTACTGGCATACTCAAAGATCTTGGATACACTGAGCAAATGATGGACGAAGATTTGCTGAAGCGAAACACCGATTGCGTCTATTTCTTGGCCTCCCCCCTCACTTGCAAGAAGGGGGTTGATTGTGAGTATCGGCATAATGAGATAGCAAGGCTAAACCCAAGGGATTGCTGGTACTGGTTATCTGGGAAATGTCTTAATCCAACATGTGCTTTTAGACACCCTCCATTGGAAGGGCATACCGGAGTGCCATCTGAACCTACACAATCTTCTTTACCTGAAAACAAGACAAAGGTTCCCTGTTATTTTTTCTTCAATGGATATTGCAATAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATTATAGCTTTTCTAGTGGTAAGTCTATGAAGAATGATTCTGGAAGCACTGATGGGCACTTACTAGAAAATAAAACATCATCAGGAAATAAAACAGGTGTGATATCAACACCAGCTGAAACAGATCTTGATCCATCTGAAATTGCCCCAAAGGCTCCACTTGAATGTAAATTTCATCCTATCGAAGATCTTCAGCAACCAGTACCAAAAAATGTTAAACAGCAAAGTACTTCCCCGGAGATATCTACTTATGAGTATAAAGATGCCACTGTGATTGGGCCAGATTCCGTACATTCAGCAGAAGACTTTGTTTATAACATTTCTCACTTATGCACTGAACAGAGTACAGAGGAGCAAGTAAATAGTCACATAGAACCTGAGGAACGATGGGAATCATCCCCTGGATTTGATGTTCTTGTTGATGATGAAATGGAGAACTTGGGTTATGAGGATGATTCTGAATATTTACCGGTGCTTGATCGGGAACCCAGGGAATTGAATGGGCATTACTTGCAGTATGAATTCAAAGACACAGTTGAGTATGATCCTATGTGTCCAGAAACTGACATTTTGTATGAGCAAGAGATTTATGATGGTTACAGATGTATAGAGAGTGATCATACTCTTGCTGATGACAGAAAAGTTTCTCCTTATTCCAGAGAGAGAATATTAGATTCTATATTGTCCAGGAAGAGGTTTCGGATGCCAGCAGAAATGGCTGCTTGTGACAGGAACTTAGATCTACGAGACCATTTGAGGAGACGTAGGGAAATTAATGGTCGGCCTGTTACTGGCTTATTAAGAAGACATGAATCATCATATCTGATGGTTCGAAATCAGTATAGGCCTCAAAGGCACAGTGTTGATCAACGGCTAAATACTAGAAGATTGACATCAGAGGTGGGATTGAGCACCATAGACTCAATTGGAGAGGGTGAAACTCTTTCAATTTCTAACAAGCACAGCTTATCGAGGCATTCTCCGCAACATATATCAAGGAAGCATTATAAAGAAAAACAAGCTAAACGGCAGTATCTTTCACCTAGAATCTCCAGGAAACCAGTTTCAAAGCAAAGGAGATCTATTGACGAGTCTACTACTACTACATTTTCTGGACCCAAGACTCTAGCAGAAATTAAAGAAGAGAAGAAGAAGGCTGCAGAAAAAGGCCATTTTAAAAGCACGTCAGCTGACTTCCAGGATCCCAAACCTTTAAGTGAAATCCTCAAGGACAAGGGGAGGTTGGATTATGTGGAAGATGGCAATATCTGCTATGATTGA 2631 0.4105 MATFFKRLARATPIASANAFNGQYNSTYSHFPVPFGAIAAISGGLSYFYYFSSPNLVHLEEFKEDKSQNIALNPDKWIQFKLQDTARVSHNTHLFRFSFDPTRKLGLDVASCILTRAPLGQDAEGKPKYVIIAPVWYTPISDPESKGYIDLLIKVYPEGKMNQHFASLKPGDVVEVKGPIEKLRYTPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDKSQISLLYANVSPDDILLKQKLDILAAGHPNLKIFYTVDNPTKNWRGGAGYISKDMVVKGLPSPSDDTLIFLQLIIVFEGSGDGLSLCVDGPPGMMKHVSGDKAKDRSQGKLTGILKDLGYTEQMMDEDLLKRNTDCVYFLASPLTCKKGVDCEYRHNEIARLNPRDCWYWLSGKCLNPTCAFRHPPLEGHTGVPSEPTQSSLPENKTKVPCYFFFNGYCNKGDRCSFLHGPDYSFSSGKSMKNDSGSTDGHLLENKTSSGNKTGVISTPAETDLDPSEIAPKAPLECKFHPIEDLQQPVPKNVKQQSTSPEISTYEYKDATVIGPDSVHSAEDFVYNISHLCTEQSTEEQVNSHIEPEERWESSPGFDVLVDDEMENLGYEDDSEYLPVLDREPRELNGHYLQYEFKDTVEYDPMCPETDILYEQEIYDGYRCIESDHTLADDRKVSPYSRERILDSILSRKRFRMPAEMAACDRNLDLRDHLRRRREINGRPVTGLLRRHESSYLMVRNQYRPQRHSVDQRLNTRRLTSEVGLSTIDSIGEGETLSISNKHSLSRHSPQHISRKHYKEKQAKRQYLSPRISRKPVSKQRRSIDESTTTTFSGPKTLAEIKEEKKKAAEKGHFKSTSADFQDPKPLSEILKDKGRLDYVEDGNICYD 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1077 876 MobiDBLite consensus disorder prediction 457 489 - -
Glsi02g1077 876 Gene3D - 342 407 - -
Glsi02g1077 876 Gene3D - 415 487 - -
Glsi02g1077 876 Pfam Oxidoreductase NAD-binding domain 195 318 IPR001433 GO:0016491
Glsi02g1077 876 Gene3D - 178 341 IPR039261 -
Glsi02g1077 876 Pfam Zinc-finger containing family 350 406 IPR041686 -
Glsi02g1077 876 Pfam Oxidoreductase FAD-binding domain 80 185 IPR008333 -
Glsi02g1077 876 MobiDBLite consensus disorder prediction 767 855 - -
Glsi02g1077 876 ProSiteProfiles Zinc finger C3H1-type profile. 424 451 IPR000571 GO:0046872
Glsi02g1077 876 SUPERFAMILY CCCH zinc finger 424 449 IPR036855 GO:0046872
Glsi02g1077 876 ProSiteProfiles Zinc finger C3H1-type profile. 380 406 IPR000571 GO:0046872
Glsi02g1077 876 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 172 317 IPR039261 -
Glsi02g1077 876 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 427 450 IPR000571 GO:0046872
Glsi02g1077 876 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 75 186 IPR017927 GO:0016491
Glsi02g1077 876 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 344 867 - -
Glsi02g1077 876 FunFam NADH-cytochrome b5 reductase 177 346 - -
Glsi02g1077 876 SUPERFAMILY Riboflavin synthase domain-like 70 188 IPR017938 -
Glsi02g1077 876 PRINTS Cytochrome B5 reductase signature 171 185 - -
Glsi02g1077 876 PRINTS Cytochrome B5 reductase signature 194 213 - -
Glsi02g1077 876 PRINTS Cytochrome B5 reductase signature 135 142 - -
Glsi02g1077 876 PRINTS Cytochrome B5 reductase signature 232 243 - -
Glsi02g1077 876 CDD cyt_b5_reduct_like 80 344 - -
Glsi02g1077 876 FunFam NADH-cytochrome b5 reductase 70 176 - -
Glsi02g1077 876 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Glsi02g1077 876 SMART c3hfinal6 382 405 IPR000571 GO:0046872
Glsi02g1077 876 SMART c3hfinal6 425 450 IPR000571 GO:0046872
Glsi02g1077 876 Gene3D Translation factors 70 177 - -
Glsi02g1077 876 MobiDBLite consensus disorder prediction 457 497 - -
Glsi02g1077 876 FunFam Zinc finger CCCH domain-containing protein 17 343 406 - -
Glsi02g1077 876 ProSiteProfiles Zinc finger C3H1-type profile. 349 378 IPR000571 GO:0046872
Glsi02g1077 876 MobiDBLite consensus disorder prediction 826 846 - -
Glsi02g1077 876 MobiDBLite consensus disorder prediction 776 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1077 Glsi-ChrGlsi02 7223319 7235546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1077 66 289 NADPH P450 reductases AT5G17770 40.708 4.78e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi02g1077 NAD_binding_1 1.4e-22 CL0091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1077 02 7223319 7235546 Glsi02g1077 02 7223319 7235546 ECH