Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1075 ATGAACAAGAATCCTTTGGACCCAGATTCAGCATCCAAGAAAGGAAGGAGCTGCAGGTTCTTCATCAAGACCCAATTATGCGAAGATCATCACAAAATGGGTTCTTGTAGGAAGGGTGAGAAGTGCACATTTGCTCATGGCAAAGAGGAACTTAGAGAGCCACCACCACCATCTCCAAAATGGAGAAGTGGGATCACTGAAGAAGAAGAAAGGTCATCTGGGAATTGGGACGTGGAAGATGACCCAAAATTAGTAGAAGATCAGATGAAGCAAAGCTCTTCTCCCCCATCAACTAGTAAAGCGTTTCAAGAACACTGGACTTGCACCGCCAGGAACTGTAAAGCTACCAACGATGGCCGACTAAACAGCTACAACTGCTATAGATGCGGTCGATACAAAGTTGGTCTTAAGAAATGGAATATGACAAAGGGGACTCCCAGATGGATTTGCCCCAGAACTTCTCTTTTGATTACAGATTCCATTGGAATCTTATTTGAATTCATAAGGAACGAGAAACCTTTGAACCCAGATTCAGCATCCAAGAAAGGAACGAGCAGCAGAGGAAGAAGTGAATATCATCGCGAAATGGATTCTTGTAGGAATGGTGAGAAGTGCAAATTTGCACATGGCAAAGACGAACTTAGAGAGCCAACACCATCATCACCTCCAAAATGGAGACATGGAATCACTGAAGAAGAAAAAGGGTCATCTGGGAATTGGGACGTGGAGGATGACCCAAAATTAGCAGCAGAAGATCACATGAAGCAAAGCCCTTCTGACTTCTCGCCAAAAAACAAATGCCCTTCTCCTCCATCAACTAATAAAGCGTTTCAAGAGGAATGGATTTGCAGTGACTGTTTAGCTCCCAACGATGGCAGACTAATAAAAAGTGACAACTGCTATAGATGCGATGCATATAAATATGGTCTTGCAAGATGGAGGTCTCGCAAATGGATTTGCCCTAGGGTTTTCTTGCCCCTTTCACTTCACTGCTTGTGTGAATTTGGCCTTGGCCAAGATTTGGTTTTGGATAATTCATTCCATCAATTCCAAATCTCTGGAGCTTTCTACTTTGAGTTTCCTGATCACCCCTCTTTGTTGTTGTTATGGATCCATGTCGATGCCTTTTGCTTCAGATATCGATTCCATCGGATTCTGGGTGTCATGGCTTCTTCCGAGAGCGACATTGCCGTATTGAAGAAGGACATTTTCTTCAAGACGCGCTTATGCGTGAAATTCCAAACGGAAGGAACTTGTGAGGAGGGCGGGAACTGCGACTACGCACACGGCGACGAGGAATTGAGAGACTCGCCACCAAATTGGAGAGGTCTTATTTATGATTATTGGAAATTGGAAAACGATGGCGGGAAAATAGCAGATGAAAAGAAGAAGGGATGCAAGTATTATATGAAATTGAGGGAATGTCCTTTTGGCGAAAGCTGTCAATTTCTTCATGATCCCGGAACGATGAGGGAGAGTTCAGCAATAACCATCCCAACCCATCATCGACCTCCCCAAATAATGATGAGGGAGAGCTCAGCAATTACCATCAATACAACCGATCCACCTCCCAAACTGATCAGGGACCCCTCAGCAATGATCATCAGTACAACCCATCCGCCTCCAAATTCTGATCCCCGGAAAGGGTCTAATGATCCACAAAGTGAAAGGCCAGTGAACACAGGCGCACGTATTCCCCCACCAGAAGAAAAAGTGGCTAAACGCTTGGGAGCAGCAGAAGCTTCATGCCCGGTTGCAAGGATACCGAGGAAGATGAGTGGAATTTATGTAAAAAAAGCAAAAGATAGAGATTTGTGGGTCCCGAGGTTCTCAAGCGGGACAGGTGTCACTATTGTAGGCCTCTTCAGTGACCAGTTACCACCAATCCCTGGCTCTCCCCACCCGCCTCCTTTGTCTCCTTCAAAACTTACTTGCTGCCAATGGAAGATGGTCAAACGCTTCCTTCTTCCTTCTTCCTCGACCCTCTCTTCCATAATTTCGATAACTAAGAAACTCTCCCTTCAGACCTTATCTCTAACAAGAGCTTTCTCACAATTGAAGGCCTACCCTACCACCATGTCCATCAACTTACAGTCCCATGCCTTTGCAGGCAACCCTTTAAGATCCAAATCCCCGAATCCGGGTGACCCTTTTTCACCCACAAGAGATCTTGAAGCACTGAAGACCCGACTATTAGATAATACTCATTCTGCATCTTCCCCAAATTTCAAGGTGTTACCTTTCCGAAATGGGAAGCCTTTAGCGTCTTCGGCTGCTGGGTCCGGTGAATCGCCACCGATTTGGCATCTGGGTTGGATCAATTTGGATGATCTCAAGGGACTCTTGGAACATTCTGGTGTTCAATTGAGCGGAGACTCGTTGGTGTATCTGGGTTCGCGTGCGGACGACGACGTCGTTTACTGGGCAATCGATGTTTCTGCTGAGCGTAGCCTGGTCCCTGAATTGTGTAGCAAGCAGTTCTGTTTTGTGGAGCTGCGAACACTCATGGTGGCTACAGATTGGGCGGACTTCCAAGCCATGGGGAACTTGGCCATTGCTGGTCATGCCAGGGCACTGCTAGAATGGCATAATTTATCACGTTTTTGTGGACATTGTGGAGAGAAAACAGTCCCTATGGATGCTGGGAGGCGGAAGCAATGTTCAAATGAATCATGCAGAAAGAAAATATATCCACGTGTTGACCCGGTGGTCATTATGTTAGTCATTGATCGAGAGAACGATCGAGCCCTTTTGAGTAAACAATCAAGATTTGTACCAAGAATGTGGAGCTGCTTAGCTGGTTTTATTGAGCCAGGAGAAAGTTTAGAGGAGGCTGTGAGAAGAGAAACATGGGAGGAGACTGGTATTGAAGTGGGAGAAGTTGTATATCACAGTTCTCAGCCATGGCCTGTTGGACCAAACAGCATGCCATGCCAACTGATGATTGGGTTCTTTGCATATGCAAAATCTCTTGAAATAAACGTGGACAAGACGGAGTTAGAAGATGCTCAGTGGCACAGTAGAGAAGATGTAAGAAAAGCTTTGACATTTGCTGAATATAAGAAAGCCCAAAGAACTGCAGCAGCAAAAGTGGAACAAATGTGCAAGGGAGTGGAAAAAAGTCACAGCTTGGCTGCAGATTTCAATGTAGAAAGTGGTGAACTTGCTCCAATGTTTGTTCCTGGACCCTTTGCGATAGCCCATCACCTTATCTCCGCTTGGGCCTTTCAAGATCAAATTAATGGTGTTGAATGTCATTTAAAACAACCTACTGGTTCTGTATCAAATTTATAG 3294 0.4532 MNKNPLDPDSASKKGRSCRFFIKTQLCEDHHKMGSCRKGEKCTFAHGKEELREPPPPSPKWRSGITEEEERSSGNWDVEDDPKLVEDQMKQSSSPPSTSKAFQEHWTCTARNCKATNDGRLNSYNCYRCGRYKVGLKKWNMTKGTPRWICPRTSLLITDSIGILFEFIRNEKPLNPDSASKKGTSSRGRSEYHREMDSCRNGEKCKFAHGKDELREPTPSSPPKWRHGITEEEKGSSGNWDVEDDPKLAAEDHMKQSPSDFSPKNKCPSPPSTNKAFQEEWICSDCLAPNDGRLIKSDNCYRCDAYKYGLARWRSRKWICPRVFLPLSLHCLCEFGLGQDLVLDNSFHQFQISGAFYFEFPDHPSLLLLWIHVDAFCFRYRFHRILGVMASSESDIAVLKKDIFFKTRLCVKFQTEGTCEEGGNCDYAHGDEELRDSPPNWRGLIYDYWKLENDGGKIADEKKKGCKYYMKLRECPFGESCQFLHDPGTMRESSAITIPTHHRPPQIMMRESSAITINTTDPPPKLIRDPSAMIISTTHPPPNSDPRKGSNDPQSERPVNTGARIPPPEEKVAKRLGAAEASCPVARIPRKMSGIYVKKAKDRDLWVPRFSSGTGVTIVGLFSDQLPPIPGSPHPPPLSPSKLTCCQWKMVKRFLLPSSSTLSSIISITKKLSLQTLSLTRAFSQLKAYPTTMSINLQSHAFAGNPLRSKSPNPGDPFSPTRDLEALKTRLLDNTHSASSPNFKVLPFRNGKPLASSAAGSGESPPIWHLGWINLDDLKGLLEHSGVQLSGDSLVYLGSRADDDVVYWAIDVSAERSLVPELCSKQFCFVELRTLMVATDWADFQAMGNLAIAGHARALLEWHNLSRFCGHCGEKTVPMDAGRRKQCSNESCRKKIYPRVDPVVIMLVIDRENDRALLSKQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPNSMPCQLMIGFFAYAKSLEINVDKTELEDAQWHSREDVRKALTFAEYKKAQRTAAAKVEQMCKGVEKSHSLAADFNVESGELAPMFVPGPFAIAHHLISAWAFQDQINGVECHLKQPTGSVSNL 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1075 1097 Pfam NUDIX domain 903 1016 IPR000086 -
Glsi02g1075 1097 ProSitePatterns Nudix box signature. 934 955 IPR020084 GO:0016787
Glsi02g1075 1097 FunFam Nudix hydrolase 19, chloroplastic 899 1078 - -
Glsi02g1075 1097 Gene3D - 404 493 - -
Glsi02g1075 1097 Gene3D - 745 898 - -
Glsi02g1075 1097 PRINTS NUDIX hydrolase family signature 943 958 IPR020476 -
Glsi02g1075 1097 PRINTS NUDIX hydrolase family signature 929 943 IPR020476 -
Glsi02g1075 1097 SUPERFAMILY CCCH zinc finger 20 52 IPR036855 GO:0046872
Glsi02g1075 1097 MobiDBLite consensus disorder prediction 63 80 - -
Glsi02g1075 1097 SUPERFAMILY CCCH zinc finger 403 435 IPR036855 GO:0046872
Glsi02g1075 1097 ProSiteProfiles Nudix hydrolase domain profile. 898 1028 IPR000086 -
Glsi02g1075 1097 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 745 862 IPR015375 GO:0016787
Glsi02g1075 1097 MobiDBLite consensus disorder prediction 173 197 - -
Glsi02g1075 1097 ProSiteProfiles Zinc finger C3H1-type profile. 21 49 IPR000571 GO:0046872
Glsi02g1075 1097 ProSiteProfiles Zinc finger C3H1-type profile. 460 488 IPR000571 GO:0046872
Glsi02g1075 1097 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 714 1079 - -
Glsi02g1075 1097 MobiDBLite consensus disorder prediction 534 568 - -
Glsi02g1075 1097 MobiDBLite consensus disorder prediction 210 273 - -
Glsi02g1075 1097 SUPERFAMILY Nudix 850 1027 IPR015797 -
Glsi02g1075 1097 CDD NADH_pyrophosphatase 902 1077 - -
Glsi02g1075 1097 FunFam Nudix hydrolase 19, chloroplastic 757 898 - -
Glsi02g1075 1097 MobiDBLite consensus disorder prediction 536 558 - -
Glsi02g1075 1097 Gene3D - 14 53 - -
Glsi02g1075 1097 Gene3D - 190 216 - -
Glsi02g1075 1097 ProSiteProfiles Zinc finger C3H1-type profile. 184 212 IPR000571 GO:0046872
Glsi02g1075 1097 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 899 1042 - -
Glsi02g1075 1097 MobiDBLite consensus disorder prediction 210 259 - -
Glsi02g1075 1097 SMART c3hfinal6 21 48 IPR000571 GO:0046872
Glsi02g1075 1097 SMART c3hfinal6 404 431 IPR000571 GO:0046872
Glsi02g1075 1097 SMART c3hfinal6 460 487 IPR000571 GO:0046872
Glsi02g1075 1097 SMART c3hfinal6 188 211 IPR000571 GO:0046872
Glsi02g1075 1097 Pfam NADH pyrophosphatase zinc ribbon domain 866 895 IPR015376 GO:0016787|GO:0046872
Glsi02g1075 1097 ProSiteProfiles Zinc finger C3H1-type profile. 404 432 IPR000571 GO:0046872
Glsi02g1075 1097 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 466 487 IPR000571 GO:0046872
Glsi02g1075 1097 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 23 48 IPR000571 GO:0046872
Glsi02g1075 1097 SUPERFAMILY CCCH zinc finger 461 490 IPR036855 GO:0046872
Glsi02g1075 1097 MobiDBLite consensus disorder prediction 47 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1075 Glsi-ChrGlsi02 7201471 7217887 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi02g1075 NUDIX 3.4e-17 CL0261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1075 02 7201471 7217887 Glsi02g1075 02 7201471 7217887 ECH