Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1055 ATGCAAGAAAAAACATATCTTAGGCTTGTTCCCAGGTTCAGTAACAATCATACTGTCTTTAATCGTGTTTATTTTGTTGACGATGTTGTACACCAAATCATAATTCATTCAAGTTCTCCCTTTTGTGTGTCTTCAGAATGCTGCAATTTAATTTGTAGTAAATCTTATTCCATCCTCAAGTCTTTCAGGTTCGTCTACGCCTCTCTGAATTTGGATGCAATTTGTCAGCGAGGTTGTGGTAAGGTTTTCAAAGCTCCCTTTATCGAGAAGAATTCGTCAATGAAACGGGAAGTGCAGCTAGAGCCGCCGGTTCCGCAAAACCTTGGGGATTCCGACCCGTTACTCGATAACCAGGAGGAGGAGCAGGAGTCCCCGGGAAGCTCTAGCGAAATTAAGGATGAGGATATCGAGGCTGGCCTACTTCCTTCTTGTCGAATTTGTCTGGAAAGCGAATCCGAACCAGGTGATGAATTGATATCTCCATGCATGTGCAAGGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGTTTTGCCTTCTCACACTGCACCACTTGCAAAGCTCAATTTCATCTCCGTGTTGAAATGTTTGAAGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTATTTTTGGCTGTACAAACTGTGATTGCTGCAATGGGCGGCTTTGCATACCTCATGGACAGAGATGGGGCCTTCAGGAACTCATTCGATGATGGTTGGGATCGAATACTGTCAAAACATCCTATACCATTTTATTATTGTATTGGAGTACTGGCCTTCTTTGTGCTGCTTGGATTTTTTGGCCTCATACTACATTGCACCTCCCTCAATACCAGTGACCCCAGAATGGCTGGTTGTCAGAATTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCATGCTTTGCCCTTGTGATTGTTTTTGTTGTTATCTTTGCCATTCTGGGTATAGCTTATAGTTTCCTTGCGGCCACCATGGCCATTCAAAGAATTTGGCAGAGACACTACCACATCCTCACCAAGAGGGAGCTGACGAAGGAATACGTAGTGGAGGACCTCCAAGGTTCTTATTCCCCACCAAAATTGGACCCAGAACATGAAGAACGCTTGAAAATGCTTAAGCTTTTGTGA 1200 0.44 MQEKTYLRLVPRFSNNHTVFNRVYFVDDVVHQIIIHSSSPFCVSSECCNLICSKSYSILKSFRFVYASLNLDAICQRGCGKVFKAPFIEKNSSMKREVQLEPPVPQNLGDSDPLLDNQEEEQESPGSSSEIKDEDIEAGLLPSCRICLESESEPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVEMFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAMGGFAYLMDRDGAFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCTSLNTSDPRMAGCQNCCYGWGILDCFPASMEACFALVIVFVVIFAILGIAYSFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLQGSYSPPKLDPEHEERLKMLKLL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1055 399 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 108 399 - -
Glsi02g1055 399 SMART ringv_2 143 195 IPR011016 GO:0008270
Glsi02g1055 399 ProSiteProfiles Zinc finger RING-CH-type profile. 136 201 IPR011016 GO:0008270
Glsi02g1055 399 SUPERFAMILY RING/U-box 142 199 - -
Glsi02g1055 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 208 IPR013083 -
Glsi02g1055 399 CDD RING_CH-C4HC3_MARCH 144 195 - -
Glsi02g1055 399 Pfam RING-variant domain 144 194 IPR011016 GO:0008270
Glsi02g1055 399 MobiDBLite consensus disorder prediction 96 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1055 Glsi-ChrGlsi02 7058466 7065589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1055 94 399 C3H Transcription Factor Family AT1G11020 77.812 1.72e-169 475
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1055 02 7058466 7065589 Glsi02g1055 02 7058466 7065589 ECH