Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1043 ATGACGATTGACGACGAAAGTTCCATATATGTCGGAGGTCTCCCCTACGACGCCACCGAAGATAATATTCGCGCCGTCTTTGATTTGTATGGTGCCATTGTTGATATCAAGATTATTAATGATCAGAGAACTAGAGGCAAGTGCTATGGTTTTGTTACTTTCACAAATCCTCGTTCAGCAGTGGATGCTATCAATGATATGAATGGCAGAACCATTGATGGCCGTGTGGTTAAAGTAAATGGGGTGAAGACTAGAGGTGGAAGACCAAATTTGGGTAGAGACCGTTTTCATCATAGTACTGAGAGGAATGGAGATTGGGATCGTGATAGAGATCGAGATCGAAATTATGTCTATGATAAAGATGGATACCGGAATAGAGAACGTGATAGGTCTCGAGACCATGAGCAGGATAGGGATAGAAGATATGAACATATACATGATTATGATCAAGCAAGAGACCCTTATCTAGATAAAGATCAGAGTCGTGAAGGAGATTGGGTGCATCATGAACTAGAACACAGCAGGGCGCATGGTCAAGATATGGAAAGAGATCATAATTTAGATTTGGATATTGACAGGAAGATGGATAAGACCAGTGATCATGATAGAAGCTTTGATGAAAATAGACATGAACAGTCAAGGAGAAACAACGGTTTGAATGTTATGAATCAACATAGCATGGATCTTTCATCAGATTCAAATGGTAATCAAGATAACCAGGTAGAAGATGAATTAGAGAGGTCAAATCAAAGGTTTGATCAACTTAAAAAGGAGGTTTCTCTGATGGAGGAGACGTTGCTAGAGAAACAACATCTTGTAATGGATTTACAGAAGCAGTCTAGGAAACTGGAGGATGCATTGGTTAATGCAAAGAAACACTCTTCATATCGTCAGATGCAGTTGACCAAGCTGCACAAATGTTTTCTGCAAGTGAGAGATTACACAGAAAGACTTAAAACCTTTGAAAAAGAACTTCAGGTTCTGGTTGACACAGCCATGTTAGAAAGTGATGGTGATGGTTAA 1023 0.3969 MTIDDESSIYVGGLPYDATEDNIRAVFDLYGAIVDIKIINDQRTRGKCYGFVTFTNPRSAVDAINDMNGRTIDGRVVKVNGVKTRGGRPNLGRDRFHHSTERNGDWDRDRDRDRNYVYDKDGYRNRERDRSRDHEQDRDRRYEHIHDYDQARDPYLDKDQSREGDWVHHELEHSRAHGQDMERDHNLDLDIDRKMDKTSDHDRSFDENRHEQSRRNNGLNVMNQHSMDLSSDSNGNQDNQVEDELERSNQRFDQLKKEVSLMEETLLEKQHLVMDLQKQSRKLEDALVNAKKHSSYRQMQLTKLHKCFLQVRDYTERLKTFEKELQVLVDTAMLESDGDG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1043 340 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Glsi02g1043 340 MobiDBLite consensus disorder prediction 82 158 - -
Glsi02g1043 340 CDD RRM_SF 9 80 - -
Glsi02g1043 340 MobiDBLite consensus disorder prediction 88 158 - -
Glsi02g1043 340 Gene3D - 2 97 IPR012677 -
Glsi02g1043 340 Coils Coil 238 265 - -
Glsi02g1043 340 Coils Coil 311 331 - -
Glsi02g1043 340 PANTHER GEO13361P1-RELATED 6 202 - -
Glsi02g1043 340 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 185 - -
Glsi02g1043 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Glsi02g1043 340 MobiDBLite consensus disorder prediction 215 238 - -
Glsi02g1043 340 MobiDBLite consensus disorder prediction 171 246 - -
Glsi02g1043 340 MobiDBLite consensus disorder prediction 171 214 - -
Glsi02g1043 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Glsi02g1043 340 SMART rrm1_1 8 80 IPR000504 GO:0003723
Glsi02g1043 340 Coils Coil 273 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1043 Glsi-ChrGlsi02 6997123 7002090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1043 7 96 Eukaryotic Initiation Factors Gene Family AT2G36660 30.000 4.04e-06 46.6