Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1042 ATGGCATCGCCATCGGAGGTTAGCCTGGATTACAAACCCCACCATAGTTATTCCATGCTTCTGAAATATTTTGGAGATCAGAGTACTGGTCAGACATACGAGCTTGAAGAGTTCCTTTCTCGCCTAGAGGAAGAGCGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCCCTCTGCATGCAACTACTTACCAACGCTATGGAGGCTTCGAGGCAGCAACTTCAGGATTTCAGAGCAAATCAAGGCACAAGGCCAGTTCTGGAAGAATTCATGCCCTTAAAACATTCAATCTCTGAAAACTCTGAGAAGGCATCGAACTTATCTGATAAGGCAAATTGGATGACATCTGCTCAACTGTGGAGCCAAACAAGTGAAGAAACCCAGCCTCAACCCACAATTACATCACCTAAAGAAGCTCATGATATTGGCTTCAACGTGAGCCCTAAACTAGCTCTAGATACCAAACAGAGGAATGGTGGAGCCTTCCTTCCATTCTCGAAGGAACAAAACTCGTGCCAAGGTTCCACATTGCGAGCTCTCCCAGAGCTGGCTCTTGCCTCTGCTGAGAAACAAATGGAGGACAAGAAATGCCCAGAGCCTCAGAATGGTATCTCAAGTCCAAAGAGGGAGAATTCTGGTAAAGGAGGTAATGGTGGGGTGGTTAATGATCAAGGAAAAGGGACAACAGTTTCGTCTGAGACACTAACAACCAGCAACACCCCTTCCACTACAACTACCACTACTCAACCTCATAGGAAAGCAAGAAGGTGTTGGTCGCCGGACCTGCACCGCCGGTTTGTGAATGCTCTTCAGATGCTTGGTGGCTCTCAAGTGGCCACCCCAAAACAGATTAGGGAGCTGATGAAGGTTGACGGTCTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACAAGACGACCCAGTCCAAGCCCACAAGCAGCTGGGGCACCCACGCCCCAGCTGGTAGTCCTAGGAGGAATCTGGGTCCCACCGGAGTACGCCGCCCATACAGGCGCCGCCAATGCCCTGTATGGCCCACACCCTGCTTCCCATGCTCCACCACCACACTACTGTACTGCGACGCCTCTGCCCCAAGACTTCTACTCTGCTGCAGTAACACCGCAACCACAGAACAACACCCTCCACCACCACCTCCACATGTACAGGACGACGTCGCAAACCCAAGGATCACCGGAATGTGAAGTTAGAGGAGGTGGTGACAGGTCGGAGAGTATGGAGGATGGGAAGTCGGAAAGTAGTTGCTGGAAGGGAGAGAGTGGGGAGAATGAAGGGGAGAGAAAAGGGTTGGCTGCACTTAGAGAAGATGGAGAAGAGAGTATTGGGAGTGAGATCACTCTGAAATTCTAG 1383 0.5033 MASPSEVSLDYKPHHSYSMLLKYFGDQSTGQTYELEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQDFRANQGTRPVLEEFMPLKHSISENSEKASNLSDKANWMTSAQLWSQTSEETQPQPTITSPKEAHDIGFNVSPKLALDTKQRNGGAFLPFSKEQNSCQGSTLRALPELALASAEKQMEDKKCPEPQNGISSPKRENSGKGGNGGVVNDQGKGTTVSSETLTTSNTPSTTTTTTQPHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPTPQLVVLGGIWVPPEYAAHTGAANALYGPHPASHAPPPHYCTATPLPQDFYSAAVTPQPQNNTLHHHLHMYRTTSQTQGSPECEVRGGGDRSESMEDGKSESSCWKGESGENEGERKGLAALREDGEESIGSEITLKF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1042 460 MobiDBLite consensus disorder prediction 222 253 - -
Glsi02g1042 460 MobiDBLite consensus disorder prediction 188 257 - -
Glsi02g1042 460 NCBIfam myb-like DNA-binding domain, SHAQKYF class 253 308 IPR006447 GO:0003677
Glsi02g1042 460 MobiDBLite consensus disorder prediction 408 454 - -
Glsi02g1042 460 MobiDBLite consensus disorder prediction 395 460 - -
Glsi02g1042 460 Coils Coil 60 80 - -
Glsi02g1042 460 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 28 428 IPR044787 GO:0003700|GO:0006355
Glsi02g1042 460 Coils Coil 35 55 - -
Glsi02g1042 460 SUPERFAMILY Homeodomain-like 251 311 IPR009057 -
Glsi02g1042 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 252 310 IPR017930 -
Glsi02g1042 460 Gene3D - 252 310 - -
Glsi02g1042 460 FunFam Myb family transcription factor 252 310 - -
Glsi02g1042 460 Pfam Myb-like DNA-binding domain 255 306 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1042 Glsi-ChrGlsi02 6993651 6995646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1042 1 460 G2-like Transcription Factor Family AT2G03500 51.738 6.16e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi02g1042 Myb_DNA-binding 1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1042 02 6993651 6995646 Glsi13g0988 13 28022652 28024863 CCT
Glsi02g1042 02 6993651 6995646 Glsi02g1042 02 6993651 6995646 ECH