Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1039 ATGACAAGCACGTGCAAAATAAGCACAGGCTTAAAAGGAGAATTGAAATTTGGTGGCATAATTCTATTGGGTGGAAACATACTAAGAACATCCCCGGTGCCGAACCCTTATACGACATTGTTTTTGTTTTTCTTTCTAATGGGGGTGGTTTTGATTGTTGCCTTGGTTTTGGTTCTGCTACTGAGTGGGCGAGTCAACACGGAGCCGACTCAGGACAAGCAAGCCCTACTTGATTTCATCATTCAAACCCCACACGCTAATCGTGTCCAATGGAACTCCTCCGACTCACCCTGCAACTGGTTCGGCGTCCAATGCGACGCTTCACGTTCCTTTGTTTATTCTCTTCGTCTTCCCGGTGTTGGTCTCGTGGGTCGGATTCCGCCCAACACTATCGGTCGCCTCACTCAGCTGCGAGTCCTCAGTCTCCGCTCAAACGGTCTCCACGGTGAGATCCCCTCCGATTTCTCCAACTTGACGTTACTTCGTAGCCTCTACCTCCAGCATAACGAACTCTCCGGCCAGTTTCCCTCCGCTGTGACTCGGTTGACTCGTTTGACCCGTCTGGATCTTTCGTCCAACAATTTTACGGGCACCATCCCTTTCTCAATCAACAATTTGACCCATCTGAGTGGTCTCTTTTTGGAAAACAATGGATTCTCTGGGATTCTTCCAAGCATTGCGGCCAAATTGGTCGACTTCAACGTGTCTCATAACCAGCTTAATGGTTCAATCCCCGAAACACTTTCAAAATTCCCTGCTTCCTCGTTTGCCGGAAACTTAGCTCTCTGTGGAGGACCATTGCAACCGTGTAACCCATTCTTTCCGGCTCCAGCACCGTCACCATCCTCAGTTGTACCCTCGATCCCGGTTCACATAAAGAAGTCTAAGAAGCTTTCAAAAGCTGCCATTATCGCAATTGCAGTTGGGTCTGCTCTGTTTGCCTTGTTATTACTGCTCCTTCTCTTACTATTCCTCCGCAAGCGGCAACGTCGGCAACCCGCGAAGCCCCCGAAGCCGGTGGCTACGACACGTGCTGCACCGGCGGAGGCTGGAACATCATCTTCCAAAGACGACATTACAGGTGGGTCTGTGGAGGCTGAGAGGAACAAGCTGGTGTTTTTCGAAGGTGGAATATACAGCTTTGACTTGGAAGATTTGCTGAGAGCTTCTGCGGAAGTTTTGGGAAAGGGAAGCGTGGGGACTTCGTATAAGGCGGTGTTAGAGGAAGGGACTACGGTGGTGGTGAAAAGGTTGAAGGATGTGACTGTTACGAAGAAAGAGTTCGAGACACATATGGAGGCTCTGGGGAAGATTAAGCATGAGAATGTGCTTCCTCTCAGAGCCTTTTACTACTCCAAAGATGAGAAATTGCTGGTCTGCGATTACATGCCCGCTGGTAGTTTGTCTGCTCTGCTTCACGGGAGCAGAGGGTCAGGGCGAACGCCACTAGACTGGGATAACCGGATGAGAATAGCGCTAGGGGCGGCAAGAGGTCTGGCCCACCTACACGTGTCGGGAAAAGTGGTCCACGGAAACGTAAAATCTTCAAACATCCTCCTCCGAGCTGACCACGAGGCCTGCGTTTCGGACTTCGGGCTGAACCCGCTGTTCGGGAACTCCGCCCCGTCGAATCGGGTGGCGGGGTATCGGGCACCTGAGGTCGTGGAAACGCGGAAAGTTTCCTTCAAATCGGACGTGTACAGCTTCGGGGTACTATTGCTGGAACTTTTAACCGGGAAGGCGCCGAATCAAGCATCGCTGGGCGAGGAAGGGATCGACCTTCCGAGGTGGGTTCAGTCGGTGGTTCGCGAAGAATGGACCGCCGAAGTGTTCGACGCAGAGCTGACGAGGTACCAGAACATCGAGGAAGAGATGGTTCAGCTTCTGCAAATAGGAATGGCGTGTGTTTCGGTAGTGCCGGATCAGAGGCCAAGCATGCCGGAGGCGTTGCGTATGATTGAGGATATGAACAGGGGCGAGACCGATGACGCGTTACGACAGTCGTCCGATGATCCCTCCAAAGGATCGGACGGTCAAACGCCCCCTCTCGAGTCAAGGACTCCACGTACATCCGTCACTCCTTAA 2085 0.5209 MTSTCKISTGLKGELKFGGIILLGGNILRTSPVPNPYTTLFLFFFLMGVVLIVALVLVLLLSGRVNTEPTQDKQALLDFIIQTPHANRVQWNSSDSPCNWFGVQCDASRSFVYSLRLPGVGLVGRIPPNTIGRLTQLRVLSLRSNGLHGEIPSDFSNLTLLRSLYLQHNELSGQFPSAVTRLTRLTRLDLSSNNFTGTIPFSINNLTHLSGLFLENNGFSGILPSIAAKLVDFNVSHNQLNGSIPETLSKFPASSFAGNLALCGGPLQPCNPFFPAPAPSPSSVVPSIPVHIKKSKKLSKAAIIAIAVGSALFALLLLLLLLLFLRKRQRRQPAKPPKPVATTRAAPAEAGTSSSKDDITGGSVEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVTVTKKEFETHMEALGKIKHENVLPLRAFYYSKDEKLLVCDYMPAGSLSALLHGSRGSGRTPLDWDNRMRIALGAARGLAHLHVSGKVVHGNVKSSNILLRADHEACVSDFGLNPLFGNSAPSNRVAGYRAPEVVETRKVSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELTRYQNIEEEMVQLLQIGMACVSVVPDQRPSMPEALRMIEDMNRGETDDALRQSSDDPSKGSDGQTPPLESRTPRTSVTP 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1039 694 SUPERFAMILY L domain-like 92 251 - -
Glsi02g1039 694 ProSiteProfiles Protein kinase domain profile. 388 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1039 694 Pfam Leucine rich repeat 123 171 IPR001611 GO:0005515
Glsi02g1039 694 CDD STKc_IRAK 394 656 - -
Glsi02g1039 694 Gene3D Transferase(Phosphotransferase) domain 1 463 676 - -
Glsi02g1039 694 PANTHER OS05G0588300 PROTEIN 50 666 - -
Glsi02g1039 694 Gene3D Ribonuclease Inhibitor 228 273 IPR032675 -
Glsi02g1039 694 Pfam Leucine Rich Repeat 184 206 IPR001611 GO:0005515
Glsi02g1039 694 FunFam Probable inactive receptor kinase RLK902 69 227 - -
Glsi02g1039 694 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 463 667 - -
Glsi02g1039 694 MobiDBLite consensus disorder prediction 671 694 - -
Glsi02g1039 694 SUPERFAMILY Protein kinase-like (PK-like) 392 653 IPR011009 -
Glsi02g1039 694 MobiDBLite consensus disorder prediction 654 694 - -
Glsi02g1039 694 Pfam Protein kinase domain 391 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1039 694 MobiDBLite consensus disorder prediction 654 670 - -
Glsi02g1039 694 Gene3D Phosphorylase Kinase; domain 1 356 462 - -
Glsi02g1039 694 Gene3D Ribonuclease Inhibitor 70 227 IPR032675 -
Glsi02g1039 694 FunFam pollen receptor-like kinase 1 358 462 - -
Glsi02g1039 694 MobiDBLite consensus disorder prediction 333 361 - -
Glsi02g1039 694 Pfam Leucine rich repeat N-terminal domain 70 106 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1039 Glsi-ChrGlsi02 6966807 6971522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1039 72 677 Receptor kinase-like Gene Family AT5G58300 54.146 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi02g1039 Pkinase 3.9e-38 CL0016