Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1036 ATGGGGTTGGGAGACAGGTTAGATGTGTATATCTATGATTATCTCATGAAGAAAAAATTACATACTTCTGCAAGGGCATTTCAGGTTGAAGGGAATGTCCCAACAGATCCTGTAGCTATAGATGCACCTGGTGGTTTTCTTTTCGAGTGGTGGTCTGTCTTCTGGGAGATATTTATTGCCAGGACAGATCAGAAGCACTCAGAAGCAGCTGCATCTTACATCAAGAATCAACAAACTAAGGCTCGAGAGATGCAGAAGCAACAAGAGCAAGAGCATCAGAAACCGCATCAGCATCAACAAATGCAAATGCAGCTCTTTTTGCAGAGGCATGCCCAACAGCAACTACAGCAGCAGCAAAAGCAACTTAACGGCGGGGCCCAGCTTGTTAATAGCAGTGTCAATGGTCCTATTAGCAACGATCCTTCAATGAGGCAGAACCATGAAACTATAAATCCCATGGGAGCTAAAGCATATGAGGAGAGGTTGAAAATTCCACTCCAGGGAGATGCCTCAGATGATGCAAAAATCAAGCAAAAGTTAGGTGGTGATATAGGTCAGTTTCTGGACCCAAATCATGCCTTATTGTTGAAAGCAGCTGCAACAACTGGTGGACAGCCTGCAGGGCAAACATTGCTTGATGCACCCAGTGGTTTTCCAAGGAATCTTCAACAAGTTCAAAGTCGTAACCAGGAAATCACAGGGTCTACACCCGTAATTGAAATAAAGAGTGATATGAATCCAATGATGACTTCTCTATCTTCTGTTCCTGAAGGATCGTTGATTGGAGGTCACAGTACTGGATCAAATCAAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTTTAGCGGGACTGGATCAGCTTTGCTCTGGATTTCTCCAGCAGAATACTTTAATGCAGTCTCCGCAGTCCTTCAATCAACTTTCACTACAGCAGCAACTTATGCTTCGTGCACAGCAGAATTTAGTGTCCCCACCTGTCAATGATCTGGATAGCAGGAGACTTAGAATTCTTCTTAATAATCAAAATATGGGTCCTGTGAAAGATGGCCTGCCAAATTCGATTGGTGATTTGTTTCCTAATATTGGAACACCAGTGCAAGTTGGTGGTTGTTATGAAGTGCCTCATCCAGACTCAAATACATTACATAAGCAACAAGTGCAAAACAGCAGTCAACAGCTTCAATATTCACAGCATCCTCTTTCAAGCGAGCATTCTGAAAATCTCGAGCAGGTAGACAAAATGGGTGGTACTAGCAGCATAATAGCAGATGGCAGCTTGCCTAGCACTTTTCAAGGAAATGAACAGGGTTCAAAAAGTCAAATTGGGCGAAAGCGGAAGCAAACATCATCTTCAGGTCATGCCAATAGTTCTGGAACTGCAAACACCACAGGACCATCTACCAGTTCACCAGCAACTCCTACGCAAACACCAGATGTGATGTCAATGCCAACTCTGCAACAGAATGTTCCTTCGGCTAAGTCATTGCTAATGTTTGGTTCTGATGGTTTGTGCTCATTTACATCAGCACAGAATCAATTGGTTGATATGGAGCGTCTTGCCGGTGATGGATCTTTGGGTGACAATGTGGAGTCATTCTTATCTCCTGATGATGCAGACCCTAAAAATAGATTTGGTAAAGGATTCTCATTTAAGGAGATCAATCCTATAATGGCAAGCACGCATAAAATTGAATGCTGTCACTTCTCATCAGATGGAAAGTTGCTTGCTACTGGTGGCCATGATAAAAAGGCTTCATTGTGGTGCACAGAGTCCTTTAATTTGAAGTTTACACTTGAAGAGCACTCTGAATGGATAACTGATGTCCGATTTAGTCCAAGCATGTCTCACATTGCTACATCCTCAGCTGACAAAACTGTTAGGGTTTGGGATTCTGACAATGTTACTAGCATATTGTTCAGTTTACTTAAGAACAATGGTTTCTATTGCCTACTTTTTGATGCCTCATTTGAACTGAAATTAGTGACAGAAGATCTGCCTGGTTATTCACTTCGTACATTTACTGGACATTCAACAACTGTAAAGTCACTGGACTTTCACCCTAGTAAAGAGGATCTTATCTTCTCTAGTGATAATCATAGTGAGATAAGATACTGGAGTATTAAGAATGGTAGTTGTGCTGGGGTTTTCAAGGGTGGTGCAACTCAGTTGAGATTTCAACCTTGTTTAGGAAGGCTTCTTGCTACTGCTGTAAATAATCATGTATCCATTCTTGATGTAGAGACCCTGGTTTGCAGACTTAAATTACAGGGCCATGAGAACCTCGTCCATTCTGTGTGCTGGGATTTTTCTGGCAAATATTTGGCATCTGTGAGTGATAACTTGGTTAGAGTCTGGACAGTTGGATCTGGTAGCAAAGGGGAGTGCATTCATGAGTTGAACGCTTCTGGCAACAAATTCAACACCTGTGTCTTTCATCCCTCCTTTCCTTGGTTGGTTATTGGCTGCCATGAGTCTCTTGAGCTTTGGAACTTCAGTGAGAACAAGACAATGACTGTGTGTGCACATGACAAGCTTATATCTTCTATGGCAGTATCAAATGTTACTAGAATTGTGGCTTCAGTTAGTCATGACAAGAATGTCAAGTTGTGGAAGTGA 2619 0.4231 MGLGDRLDVYIYDYLMKKKLHTSARAFQVEGNVPTDPVAIDAPGGFLFEWWSVFWEIFIARTDQKHSEAAASYIKNQQTKAREMQKQQEQEHQKPHQHQQMQMQLFLQRHAQQQLQQQQKQLNGGAQLVNSSVNGPISNDPSMRQNHETINPMGAKAYEERLKIPLQGDASDDAKIKQKLGGDIGQFLDPNHALLLKAAATTGGQPAGQTLLDAPSGFPRNLQQVQSRNQEITGSTPVIEIKSDMNPMMTSLSSVPEGSLIGGHSTGSNQGGSNLTLKGWPLAGLDQLCSGFLQQNTLMQSPQSFNQLSLQQQLMLRAQQNLVSPPVNDLDSRRLRILLNNQNMGPVKDGLPNSIGDLFPNIGTPVQVGGCYEVPHPDSNTLHKQQVQNSSQQLQYSQHPLSSEHSENLEQVDKMGGTSSIIADGSLPSTFQGNEQGSKSQIGRKRKQTSSSGHANSSGTANTTGPSTSSPATPTQTPDVMSMPTLQQNVPSAKSLLMFGSDGLCSFTSAQNQLVDMERLAGDGSLGDNVESFLSPDDADPKNRFGKGFSFKEINPIMASTHKIECCHFSSDGKLLATGGHDKKASLWCTESFNLKFTLEEHSEWITDVRFSPSMSHIATSSADKTVRVWDSDNVTSILFSLLKNNGFYCLLFDASFELKLVTEDLPGYSLRTFTGHSTTVKSLDFHPSKEDLIFSSDNHSEIRYWSIKNGSCAGVFKGGATQLRFQPCLGRLLATAVNNHVSILDVETLVCRLKLQGHENLVHSVCWDFSGKYLASVSDNLVRVWTVGSGSKGECIHELNASGNKFNTCVFHPSFPWLVIGCHESLELWNFSENKTMTVCAHDKLISSMAVSNVTRIVASVSHDKNVKLWK 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1036 872 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 588 IPR001680 GO:0005515
Glsi02g1036 872 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 631 IPR001680 GO:0005515
Glsi02g1036 872 SMART WD40_4 550 589 IPR001680 GO:0005515
Glsi02g1036 872 SMART WD40_4 592 631 IPR001680 GO:0005515
Glsi02g1036 872 SMART WD40_4 710 746 IPR001680 GO:0005515
Glsi02g1036 872 SMART WD40_4 833 872 IPR001680 GO:0005515
Glsi02g1036 872 SMART WD40_4 793 831 IPR001680 GO:0005515
Glsi02g1036 872 SMART WD40_4 749 787 IPR001680 GO:0005515
Glsi02g1036 872 SMART WD40_4 667 707 IPR001680 GO:0005515
Glsi02g1036 872 Pfam LisH 6 30 IPR006594 GO:0005515
Glsi02g1036 872 SUPERFAMILY WD40 repeat-like 545 872 IPR036322 GO:0005515
Glsi02g1036 872 ProSiteProfiles Trp-Asp (WD) repeats profile. 756 788 IPR001680 GO:0005515
Glsi02g1036 872 MobiDBLite consensus disorder prediction 374 483 - -
Glsi02g1036 872 MobiDBLite consensus disorder prediction 379 405 - -
Glsi02g1036 872 MobiDBLite consensus disorder prediction 76 101 - -
Glsi02g1036 872 Gene3D - 549 650 IPR015943 GO:0005515
Glsi02g1036 872 Gene3D - 722 872 IPR015943 GO:0005515
Glsi02g1036 872 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 631 - -
Glsi02g1036 872 MobiDBLite consensus disorder prediction 82 96 - -
Glsi02g1036 872 ProSiteProfiles Trp-Asp (WD) repeats profile. 840 872 IPR001680 GO:0005515
Glsi02g1036 872 MobiDBLite consensus disorder prediction 422 483 - -
Glsi02g1036 872 PANTHER TRANSCRIPTION ACTIVATOR MSS11 81 872 - -
Glsi02g1036 872 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 674 712 - -
Glsi02g1036 872 Pfam WD domain, G-beta repeat 752 786 IPR001680 GO:0005515
Glsi02g1036 872 Pfam WD domain, G-beta repeat 561 588 IPR001680 GO:0005515
Glsi02g1036 872 Pfam WD domain, G-beta repeat 596 631 IPR001680 GO:0005515
Glsi02g1036 872 Gene3D - 662 721 IPR015943 GO:0005515
Glsi02g1036 872 ProSiteProfiles LIS1 homology (LisH) motif profile. 3 35 IPR006594 GO:0005515
Glsi02g1036 872 Coils Coil 74 94 - -
Glsi02g1036 872 ProSiteProfiles Trp-Asp (WD) repeats profile. 674 716 IPR001680 GO:0005515
Glsi02g1036 872 CDD WD40 557 872 - -
Glsi02g1036 872 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 840 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1036 Glsi-ChrGlsi02 6934277 6952268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1036 668 871 Miscellaneous Gene Families AT5G08390 23.810 4.67e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Glsi02g1036 WD40 2.1e-05 CL0186