Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1020 ATGTCATCATCCAGTGGAACCCTTTGGAGCTATGAAGAAGAAAAGGCATTTGAGAATGCCATCGCTTTGCATTGGGTTGAGGAAGAATCAGAAGAGCTATGGGAGAAGATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAGGAAGTGAAGCAACACTACCAGGAGCTGGTAGAGGATGTAAGTGCAATTGAGGCAGGCCAAGTACCTTTTCCTGGCTATGCTGGAGAAAAACCTACGTTATCGAACAGGGATTTGCATGGTTCTTCCATGGCTACAACTTCAGATAAGAGATCCAATTGTAATTATGGATGTGGGTATTCCGGCACAGGGCATGAATCCATCGGGCATAGTGGTAAAGGAGGCTTGTCTAGGTCATCAGACCAAGAAAGGCGAAAAGGAATTCCTTGGACAGAAGAAGAGCATAGGTTATTTCTACTTGGTCTAGACAAGTACGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTAATTTCTAGGACTCCCACTCAAGTGGCGAGTCATGCACAGAAGTACTTCATAAGGTTGAACTCCATGAACAGAGATAGAAGGAGGTCTAGTATCCATGATATTACAAGCTTGAACAATGGAGATATTGCTACAAATCAGGAGCCAATTACAGGTCAACACAGGACCAACACAGACCCATCAAACACAACGGCTGTAGGACCATCAGTGGCTGTTGGACCATCAGTGAAGCATAGAGCTCAACCCCATATACCTGCTTGTTTAGGCATGTATGGAACTCCGGTTGGGCACCTCGTAGCTCCTCCTCCGCCTGGACATATGCCATCTGCAGTTGGAACTCCTGTTATGCTTTCTTCTCATCCCCGTTATGTTGTCCCACTTGCTTATCCAAACGCACCTCCAACAATGCACCAATAA 906 0.457 MSSSSGTLWSYEEEKAFENAIALHWVEEESEELWEKIASAVPSKSMEEVKQHYQELVEDVSAIEAGQVPFPGYAGEKPTLSNRDLHGSSMATTSDKRSNCNYGCGYSGTGHESIGHSGKGGLSRSSDQERRKGIPWTEEEHRLFLLGLDKYGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSLNNGDIATNQEPITGQHRTNTDPSNTTAVGPSVAVGPSVKHRAQPHIPACLGMYGTPVGHLVAPPPPGHMPSAVGTPVMLSSHPRYVVPLAYPNAPPTMHQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1020 301 CDD SANT 9 57 IPR001005 -
Glsi02g1020 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Glsi02g1020 301 Gene3D - 134 186 - -
Glsi02g1020 301 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Glsi02g1020 301 SMART sant 132 182 IPR001005 -
Glsi02g1020 301 SMART sant 5 59 IPR001005 -
Glsi02g1020 301 FunFam transcription factor MYB1R1 134 185 - -
Glsi02g1020 301 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Glsi02g1020 301 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Glsi02g1020 301 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Glsi02g1020 301 PANTHER TRANSCRIPTION FACTOR KUA1 5 277 - -
Glsi02g1020 301 MobiDBLite consensus disorder prediction 111 133 - -
Glsi02g1020 301 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Glsi02g1020 301 CDD SANT 135 180 IPR001005 -
Glsi02g1020 301 MobiDBLite consensus disorder prediction 202 227 - -
Glsi02g1020 301 FunFam Transcription factor SRM1 1 70 - -
Glsi02g1020 301 Gene3D - 1 70 - -
Glsi02g1020 301 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Glsi02g1020 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 184 IPR017930 -
Glsi02g1020 301 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1020 Glsi-ChrGlsi02 6829618 6831088 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g1020 Myb_DNA-binding 3.1e-06 CL0123