Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1018 ATGAGCTGGCGCAGAGTATTGAAGTCTGTACAGGCCCTCGCTGCCCATACCCTTCTCTTTTCCTTCACTCTTCTGCTCGTCCTCAAGCTCGATCACGTAGTCTCCTCCTCTTGGTGGTTAATATTTTTTCCACTATGGTTGTTTCATGCTGTTGTGGCTCGAGGAAGGTTCTCATTACCTGCGCCATCAGTTCCACGTAATCGACATTGGGCACCGTGCCATGCCGTCGTTGCAATACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCATGGTTTTGCAGCTGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTAATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGACGAAGAAAACATGAGTGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCTATGGTCTTCTTCGTTGCTGCTACAGTCTTCACACTCTTAAAACTGGGTGGTGACGTAGGTGCTCTTGGCTGGTGGGACTTGTTTATTAACTTTGGTATTGCAGAGTGCTTTGCCTTTCTTGTATGTACAAAGTGGTCTAATCCAGTCATTCATAGAAATTCCTGTTCAAGAGACGCCAGTTCATCTTCTAGTACAATTAGATATCTTGACTGGAATAGTGGTCTAGTAGTTTCTTCAGAGGAAAATCAGCGTCAGGAGAGAATGTGTGGTCTACAAGACATAGGAGGTCATTTCATGAAAGTTCCAGTTATTGGATTCCAGGTTCTTCTTTGTATGCGTTTAGAGGGAACACCTGCTAGTGCTAGATATATACCGCTTCCAGTTCTTTTCTCTCCTCTTTTCCTACTGCAAGGTGCTGGTGTACTGTTTGCTGCATCTAAGTTGGTGGAGAAACTTATAATTCTGCTACGTACTGGAGCTGGTGGAGGAATATACTTCAGATGTTCTTCAAGAGCTCATGATTGCTTTGGGTTCTTGCACCATGGTTCTAGGTTACTAGGTTGGTGGTCAATTGATGAAGGGAGTCGAGAAGAGCAGGCAAGGTTGTTCCAAGAAGGAGCATCTGGGTATAACACATTCAGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAAAGATCTTGCCGAGGAGGTCTGGAGACTCCAGGCGGCTCTTGGCGAGCAGACAGAAATTACAAAATACAGCCAACAGGAGTTTGAACGACTTCAAAATGAGAAAGTATTGTGCAGAATTTGTTTTGAGGGGGAGATTAGCATTGTATTGCTCCCATGCCGGCATCGTATCCTGTGCAGCGCTTGCTCTGAGAAGTGTAAGAAGTGCCCGGTTTGCCGTGTCTCTATTGAGGAGAGTTTACCTGTATATGATGTTTAG 1404 0.4373 MSWRRVLKSVQALAAHTLLFSFTLLLVLKLDHVVSSSWWLIFFPLWLFHAVVARGRFSLPAPSVPRNRHWAPCHAVVAIPLLIAFELLLCIYLESLYVHGFAAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLGGDVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNSCSRDASSSSSTIRYLDWNSGLVVSSEENQRQERMCGLQDIGGHFMKVPVIGFQVLLCMRLEGTPASARYIPLPVLFSPLFLLQGAGVLFAASKLVEKLIILLRTGAGGGIYFRCSSRAHDCFGFLHHGSRLLGWWSIDEGSREEQARLFQEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQNEKVLCRICFEGEISIVLLPCRHRILCSACSEKCKKCPVCRVSIEESLPVYDV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1018 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Glsi02g1018 467 FunFam Kinesin-like protein KIN-7D, mitochondrial 397 465 - -
Glsi02g1018 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Glsi02g1018 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 465 IPR013083 -
Glsi02g1018 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Glsi02g1018 467 SUPERFAMILY RING/U-box 411 462 - -
Glsi02g1018 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Glsi02g1018 467 SMART ring_2 420 454 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1018 Glsi-ChrGlsi02 6806135 6815379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1018 1 467 C3H Transcription Factor Family AT1G73950 72.377 0.0 691
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1018 02 6806135 6815379 Glsi02g1018 02 6806135 6815379 ECH