Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1016 ATGAGATTAAACATGTCCTTCTCAAGCTTTAAACAGCCAGGGTTAGGGTTATCTGGTGCAATTTCAAGCCATTCAGATATGTATCCCTCAAACATTTCCCATAACGGCAATGATCCAATCTTCTATTCTGACCAACCATTTGGCTGCAGACTTTTTTCCAATGATAGCAACACAACTTCCAAACACGCAAACGCTCGTGCCCCAACACCTCCTCCTCCTCCTCCTCTTTCGGCTTTTTCTCACTTCCCTTCTTCCTTCGAGGATAATGGAATTTTCCTCCAACAGCTCCACCATGACCTCTTACTTCACCATCAATCTCTAGCTGAGGGTGCTGCCGCTGACATGGAGATTGCTAAGAAGATTCCTAGTAAGGGACACAATATAAGCACGGAGCAGATCCCAAGAAAAAGATCTGGCAAGAGAGATCGGCACAGCAAGATTAGCACAGCTCGAGGACTAAGGGATCGGAGAATGAGACTGTCCCTTGAGGTTGCTAAGAGGTTTTTTTATCTGCAAGACATGCTAGGCTTTGAGAAAGCAAGCAAAACCGTGGAGTGGTTGCTAAATCAAGCAAAAGAGGAGATCAAGCAGCTAGCAAGAGAGAAGAATCATCTCAGTTGTAATAGTGCTGGCGTGAAGAGTGCATCTTCAACTTCAGAATGTGAAGGGGTATCTGGCTTGGATGAGGTTGCAGTCAGTGCTGGAAATGGAGATCAGCAAGAAGGGGAACCCTCAATTGGGAGAAAAATTAAACTCCCTCGAAAGAGTGCATTCCATTCTCTTGCTAGGGAGTCGAGGGTAAAGGCAAGAGAAAAGGCAAGAGAAAGGGCAAGAGAAAGGACAAAGGAAAAGAAGAGGAGAAGGAAACTAGCAGATGAATCAAAGCAATGCAGCGAGGCAACTGACCTTAACCTGAGTCAACTGGGTTCTTGGAATCCCTTGGAAACGAAAGAAGAATCTGGTACCCAGAGCCAAATTGTGAATCCCTCCTTGGATGTGCTGACTGAGGCCGAAGAACGAAGTTCTCAAGCAAAGGAGAATTTATGGACTCATGTAGATGATATGGCGGATGATGATTCACTGGTGACTATGAGCAAATGGAGCCCATCCACGATTTTCAATTCACTGCATAACTCCGGATTCCAAGAACATCTATTTGCAGAATTTCAGTCTTGGGAAAACATTGGGATTCGTACACAATCACATCTAATTAACCTACGCTAA 1224 0.4477 MRLNMSFSSFKQPGLGLSGAISSHSDMYPSNISHNGNDPIFYSDQPFGCRLFSNDSNTTSKHANARAPTPPPPPPLSAFSHFPSSFEDNGIFLQQLHHDLLLHHQSLAEGAAADMEIAKKIPSKGHNISTEQIPRKRSGKRDRHSKISTARGLRDRRMRLSLEVAKRFFYLQDMLGFEKASKTVEWLLNQAKEEIKQLAREKNHLSCNSAGVKSASSTSECEGVSGLDEVAVSAGNGDQQEGEPSIGRKIKLPRKSAFHSLARESRVKAREKARERARERTKEKKRRRKLADESKQCSEATDLNLSQLGSWNPLETKEESGTQSQIVNPSLDVLTEAEERSSQAKENLWTHVDDMADDDSLVTMSKWSPSTIFNSLHNSGFQEHLFAEFQSWENIGIRTQSHLINLR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1016 407 Coils Coil 181 208 - -
Glsi02g1016 407 MobiDBLite consensus disorder prediction 124 149 - -
Glsi02g1016 407 Pfam TCP family transcription factor 139 287 IPR017887 -
Glsi02g1016 407 ProSiteProfiles TCP domain profile. 140 198 IPR017887 -
Glsi02g1016 407 MobiDBLite consensus disorder prediction 234 328 - -
Glsi02g1016 407 MobiDBLite consensus disorder prediction 297 328 - -
Glsi02g1016 407 MobiDBLite consensus disorder prediction 53 73 - -
Glsi02g1016 407 MobiDBLite consensus disorder prediction 257 278 - -
Glsi02g1016 407 ProSiteProfiles R domain profile. 263 284 IPR017888 -
Glsi02g1016 407 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 109 368 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1016 Glsi-ChrGlsi02 6783760 6785137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1016 128 277 TCP Transcription Factor Family AT3G18550 45.294 3.78e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Glsi02g1016 TCP 1.8e-42 No_clan