Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1002 ATGGCTGAGCCAGAAAACAACAATCACACCTCGCCTGAGGATGGAGCTAAGAAGAGGAAGAGGAAAAGGAATAGACAACGGAACTCTGCAGCTGGGGAGCAATCATCAGAACACCAGGAGGTAAACCAGCATGTGGAAGAAGAAGTTGAAGAACCAGAGGAGAATGGTGAGGGGGATAAGGAATCTGTGGAGGAGATGAATGAGAAAAAGAAGAAGAAGAAGAAGGATAAGAAGGTGAAGAGTGGTGGAAAAGATAGTGAAGGGGAAAAGGGCGGCGACGATAATGACGTGGAGGAGAAGGAACAGAAAAAATTGAAGAATGCTGGGTCTGGAATTATGAGCACCGAGTCGTTTGCATCTCTGGGATTGTCTGAACCTACTTTTAGGGCCATTAACGATATAGGATTCGAGCATATGACCCAGATTCAAGCGAGAGCAATTCCACCACTTTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACAGGTTCTGGAAAAACTCTTGCTTTTCTGATACCAGCTGTGGAGCTGTTGTACAATGTTCAATTTACACCACGTAATGGAACTGGTGTTATTATCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCAAAAGAAATTCTCAAGTATCACTCCCAAACTCTTGCATTGGTTATTGGAGGTGCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTAGCAACTCCTGGTCGTCTTCTGGATCATCTTCAAAATACAAAGGGATTCATATATAAAAACTTGAAGTGCCTCATGATCGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCAAAGAATAGGCAAACGGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATATTGACGTAGATGATGGGAGGACCAAGGTCACAAATGAAGGATTGCAGCAAGGCTATGTTATTGTTCCCTGCGCCAAGCGATTTGTTGTTCTTTATTCCTTCTTGAAGAGATATCACTCTAAAAAAGTGATGGTTTTTTTCTCGTCATGCAACTCTGTCAAATTCCATGCAGACCTTCTCAATTACATTCAGGTTGAGTGCTTTAATATACATGGAAAACAAAAGCAGCAGACAAGGACTACTACCTTCTTTGACTTCTGCAAAGCAGAAAAAGGAATCTTGCTCTGTACTGATGTTGCCGCTCGTGGACTTGATATTCCTGCTGTGGACTGGATTGTGCAATTTGATCCTCCTGATGAACCCAAGGAATATATCCATAGGGTTGGTCGAACAGCTCGTGGTGAAGGTGGAAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCAAAGGTCCCTGTGAAAGAGTATTCCTATGAGGAAAAGAAGCTGGCAAATGTACAATCTCACCTGGAGAAATTGGTGGCTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATACTAGCTTATAATTCACACTCTATGAAGGACATTTTTAATGTTCACCGCCTGGATTTACAGGCTGTTGCTGCATCATTCTGTTTTTCAAATCCGCCAAAGGTGGGTCTGAGCATAGAAAGCAGTGCTTCAAAGCATAGGAAGAAAATGCGTAAAGTTGAAGGAAGCAGACATGGATTCAGCGACAGCAATCCTTATGGAAAGAGAAATGGAGATGATAACCGGCAATTTGTGAGGTATTAG 1812 0.4194 MAEPENNNHTSPEDGAKKRKRKRNRQRNSAAGEQSSEHQEVNQHVEEEVEEPEENGEGDKESVEEMNEKKKKKKKDKKVKSGGKDSEGEKGGDDNDVEEKEQKKLKNAGSGIMSTESFASLGLSEPTFRAINDIGFEHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGTGVIIICPTRELAIQTHAVAKEILKYHSQTLALVIGGAARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLQQGYVIVPCAKRFVVLYSFLKRYHSKKVMVFFSSCNSVKFHADLLNYIQVECFNIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYSYEEKKLANVQSHLEKLVANNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVGLSIESSASKHRKKMRKVEGSRHGFSDSNPYGKRNGDDNRQFVRY 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1002 603 SMART DUF4217_3 497 560 IPR025313 -
Glsi02g1002 603 Gene3D - 57 326 IPR027417 -
Glsi02g1002 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 471 IPR027417 -
Glsi02g1002 603 MobiDBLite consensus disorder prediction 563 603 - -
Glsi02g1002 603 CDD SF2_C_DEAD 337 467 - -
Glsi02g1002 603 SMART ultradead3 135 340 IPR014001 -
Glsi02g1002 603 Gene3D - 333 577 IPR027417 -
Glsi02g1002 603 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 268 276 IPR000629 -
Glsi02g1002 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 324 IPR027417 -
Glsi02g1002 603 CDD DEADc_DDX18 127 324 IPR044773 GO:0003724|GO:0005524
Glsi02g1002 603 FunFam RNA helicase 333 563 - -
Glsi02g1002 603 Pfam Domain of unknown function (DUF4217) 498 558 IPR025313 -
Glsi02g1002 603 Coils Coil 60 80 - -
Glsi02g1002 603 Pfam Helicase conserved C-terminal domain 352 456 IPR001650 -
Glsi02g1002 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 496 IPR001650 -
Glsi02g1002 603 SMART helicmild6 376 457 IPR001650 -
Glsi02g1002 603 Pfam DEAD/DEAH box helicase 140 311 IPR011545 GO:0003676|GO:0005524
Glsi02g1002 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 322 IPR014001 -
Glsi02g1002 603 MobiDBLite consensus disorder prediction 1 109 - -
Glsi02g1002 603 MobiDBLite consensus disorder prediction 46 61 - -
Glsi02g1002 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 144 IPR014014 GO:0003724
Glsi02g1002 603 PANTHER RNA HELICASE 68 504 - -
Glsi02g1002 603 MobiDBLite consensus disorder prediction 80 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1002 Glsi-ChrGlsi02 6655325 6661342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1002 111 476 Eukaryotic Initiation Factors Gene Family AT3G19760 28.610 5.53e-46 166