Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0996 ATGGAAAACCTAGAGACCTCAGAATGTTCACTCCCTTCTCAAAACCCATACAAAAATCATTCTTTAATGCCTCCTGAATCGGATAAGATCGCTGCGAAGAGGATTATGAAGGTTCCAAAAAGAGCGGACATGATGATCAATGAGAGAAAGTACCTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTTGCAGAGATCAAGGACTCCTCACAGAAACTGAGGCTGTGGTTAGGAACTTTTGACGAAGCAAAAGAGGCTGCTGTGGCTTATGACTGCGCTGCAAGGATTCTAAGAGGAAGAAATGCCAAGACAAACTTTGAAAGCCCTGGGATGATGAGCACAGTACATGAGGAAAATTGCAGCTTTTTTGGTAAGAATCCAAGGGCTTACCAGCTTCTTAAGCATGCAGTAGTCATGAAGAATCATGCAGTTTCTTCATCTGTTTATTCCACAACCATGGCGCCTTGGAAAACCCAGATCATGAGAAACGAATTCGACACGCTTGTTGAAGAAACTATAGTTTGCTCCTCCAGTTCTGACCAAGGGTCTTCATCAGGATGCTCTGGGCTTTCATTTGGGAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTATATGTCAAACAGGAAATGATCAAGAAGAAACCCCCCAAGAAGCCTTCGTCATATCTCACTCCACATAA 699 0.4349 MENLETSECSLPSQNPYKNHSLMPPESDKIAAKRIMKVPKRADMMINERKYLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDEAKEAAVAYDCAARILRGRNAKTNFESPGMMSTVHEENCSFFGKNPRAYQLLKHAVVMKNHAVSSSVYSTTMAPWKTQIMRNEFDTLVEETIVCSSSSDQGSSSGCSGLSFGSSKVYSSVVVAPSFSASICQTGNDQEETPQEAFVISHST 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0996 232 MobiDBLite consensus disorder prediction 1 21 - -
Glsi02g0996 232 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g0996 232 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Glsi02g0996 232 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Glsi02g0996 232 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Glsi02g0996 232 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Glsi02g0996 232 FunFam ethylene-responsive transcription factor RAP2-11 49 108 - -
Glsi02g0996 232 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 134 - -
Glsi02g0996 232 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Glsi02g0996 232 CDD AP2 50 107 IPR001471 GO:0003700|GO:0006355
Glsi02g0996 232 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Glsi02g0996 232 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0996 Glsi-ChrGlsi02 6605075 6605773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0996 47 106 AP2-EREBP Transcription Factor Family AT5G19790 68.333 1.90e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g0996 AP2 9e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0996 02 6605075 6605773 Glsi02g0996 02 6605075 6605773 ECH