Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0984 ATGGCACAAGATAATACTTCCATTGCTGAATCGCCACGGAGACGTTCCGGTCTATTGCGAGATCAGGTTCAACTAGTAAAAAGAAAGGACGCTAACCGCTATGAAATTGTCCCAATCCAAGATCCTTTGTCATTTGAGAAGGGTTTCTTCATAGTTATTCGTGCATGCCAATTGCTGGCTCAAAAGAATGATGGGATAATATTAGTAGGAGTTGCAGGTCCCTCTGGAGCAGGGAAGACTGTTTTCACTGAGAAGGTCCTTAACTTTATGCCGAGCGTCGCTGTCTTATCAATGGACAACTATAATGATTCTAGTCGAATTATTGACGGCAACTTTGATGACCCTCGGTTGACGGATTATGATACCTTGCTCGAAAATGTACAGGGCCTTAAAGCAGGGAAGTCAGTTCAGGTTCCAATATATGATTTCAAGGCTAGCTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCCCATATTGTCATCATAGAAGGCATCTATGCCTTAAGTGAAAGACTACGACCTTTACTTGATCTTCGTGTGTCTGTCACTGGTGGAGTTCACTTTGACCTAGTTAAGCGGGTTTTGCGGGACATTCAACGTGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAGGCCTTTATTGAGCCAGATCTCCAAACGGCACATATAAAAATCATTAATAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCTAGAGCTGTGACAGTGGATCAAATTAAGGCCGTTATTGCTGCAGAACATACTGAAACCACAGAGGAAACCTACGACATTTATCTTCTACCACCTGGGGAAGATCCTGAAGCATGTCAATCATATTTGAGGATGAGAAACCGGGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTTACAGACAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGGTACACAATTGCAGCTATCCTGAAAAGAAGCAGTCACATCTTTTATGATGATAAAGTTTGTGTAAAAACTGATTGGTTAGAACAACTTAATCGCCTCTATGTTCAGGTGCAAGGGAAAGATAGAAACTACGTAAAATATGTGGCAGAGAAACTGGAGTTGGATGGTTCATATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAATGATGTGATGGCACTGCCAGATGATCTGAAGACAAAACTCAGCATAGATGATGATTTAATTTTGAGTCCCAAAGAAGCCCTTTCCAGAGCTTCTGCTGATAGGAGAACGAAGTATCTTAACCGTGGTATGTCGCACTCTTTTTCAAATCAAAGGGACAAGACTTTATCTAAGTTGACAAGATTAGCTATAAATAACCGAAAGTTTGATGGGAGAGCCCTAGAATCACCTGCAGCGATTGCAAACCAGGGAGTTATTACTCAACTTTCTGACCAAATTTCCACATTAAATGAGAGAATGGATGAGTTCACTTCCCGTATTGAAGAACTGAATTCAAAGTTTGCAGTCAGAAAAGTTTCAGCCAGTCAACAAAACTTGGCTTTACAGGCTGAAGCCTGCAATGGCTCTGGACCCACTTCTCTCTTTGTGACAGGATTGGGCAACGGTTCAATGACTGGATCACTGTTGCCTAATTCTTCATCATCTTCCCAATTGGCGAGAGAGTCCCCCCTGATGGAAGAGGTTTTACTTGTTGCACGAGCACAACGTCAAATCATGCACCAGTTGGACACTCTGAGCAATCTTCTGCATGAATACTGTGGACAGAGGTCACGCCTAGGACGAGCAGAACAGACAAGCAGAATGCGGGAAACTGACTTCATCACCATCCCGCTGGTTCTGACCTTGGCAATTGGTGCTGTAGGTGTCTTCTTGTTCAAGGGTTTCACAACCCAAAAATGA 1986 0.427 MAQDNTSIAESPRRRSGLLRDQVQLVKRKDANRYEIVPIQDPLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSVAVLSMDNYNDSSRIIDGNFDDPRLTDYDTLLENVQGLKAGKSVQVPIYDFKASSRIGYRTVEVPSSHIVIIEGIYALSERLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSARAVTVDQIKAVIAAEHTETTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHIFYDDKVCVKTDWLEQLNRLYVQVQGKDRNYVKYVAEKLELDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLILSPKEALSRASADRRTKYLNRGMSHSFSNQRDKTLSKLTRLAINNRKFDGRALESPAAIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAVRKVSASQQNLALQAEACNGSGPTSLFVTGLGNGSMTGSLLPNSSSSSQLARESPLMEEVLLVARAQRQIMHQLDTLSNLLHEYCGQRSRLGRAEQTSRMRETDFITIPLVLTLAIGAVGVFLFKGFTTQK 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0984 661 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Glsi02g0984 661 CDD UMPK_like 68 240 - -
Glsi02g0984 661 PANTHER URIDINE KINASE 19 424 - -
Glsi02g0984 661 Gene3D - 255 414 - -
Glsi02g0984 661 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Glsi02g0984 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 237 IPR027417 -
Glsi02g0984 661 Pfam CYTH domain 273 405 IPR023577 -
Glsi02g0984 661 Coils Coil 501 528 - -
Glsi02g0984 661 Gene3D - 67 247 IPR027417 -
Glsi02g0984 661 PRINTS Uridine kinase signature 133 148 - -
Glsi02g0984 661 PRINTS Uridine kinase signature 189 199 - -
Glsi02g0984 661 PRINTS Uridine kinase signature 225 238 - -
Glsi02g0984 661 PRINTS Uridine kinase signature 66 83 - -
Glsi02g0984 661 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0984 Glsi-ChrGlsi02 6536197 6545988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0984 67 237 PRT Gene Family AT5G40870 27.778 2.70e-17 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0248 05 48180694 48246759 Glsi02g0984 02 6536197 6545988 CCT
Glsi02g0984 02 6536197 6545988 Glsi02g0984 02 6536197 6545988 ECH