Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0980 ATGCTAAAGGTGAGCTATGGCGATCATAGCGATCCCACAAACTGGGTTCGCCTCTGTGATACATGCAGAGTGGCTGCACCCACCCTTTTCTGCCATACCGATTCTGCTTACCTCTGCTTTGCCTGTGATAGCCCCTGTGATAGCCGCATCCACGCCTTGGGGTCTCCCTCATGGTCCCACCATCGCGTGCAAGTTTGCGAAGCATGTGAGAATTCCCCGGCGGCTTTCACCTGCAAGGCTGAGGCAGCATCGCTTTGCATCAACTGTGACTTCCAAGTTCACTCCGCAAACCCTATTGCCAGCCGCCACAACCGAGTCCCTGTGTTGCCACTTCCACTGCCTCAGTCAGTGAATGAGACTGAAATTGCGGATTGCAAGGAATTGGATGAACGAGAAGCTGACTCTTGGTTGGCTCTTGATTCTGACACAAAAGAAATGGATGAGTATAATTATGATCAGCAGAAGCAACCTTCGATCGGTTTTTCTGATGAAGAGATCAATAAGGAAAGGAAAGTGGAGCATGAATCCTCAGGGGTGGCTTTCACTAACCATCCCTCTTATTGTCGGAGTGTAAGATTATTGTATTTTCGTTATGAAACTGCATTTGCTATTTTGTATTCTCGTGCTTCTGTAGTAAAGTTCTCTCTTAAGTATTTTATAAGCTTTGCTTTTGTGGTGGTCCCTTTGCCCTATATGGATTTACAAATGAGTGACATCTCAAGCAATAAATTTCCAAAAGAGATCAGGATCATCTTCCCAAACACTTCATTTTCATGGGGTCAGAGTCAGGTGAACAGGAAAGCAGGAGTCCTAAAATACAAAGAGAAAAAGAAATCAAGGAAGTTTGAGAAGAGAATAAGATATGCCTACAGGAAAGCCTACGCTGAGAAACGACCCAGGGTAAAGGGCAGGTTTGCAAAACGACAAGACTTAACCTCAGAAGGACATGTTGCTCTCAATTGA 963 0.4538 MLKVSYGDHSDPTNWVRLCDTCRVAAPTLFCHTDSAYLCFACDSPCDSRIHALGSPSWSHHRVQVCEACENSPAAFTCKAEAASLCINCDFQVHSANPIASRHNRVPVLPLPLPQSVNETEIADCKELDEREADSWLALDSDTKEMDEYNYDQQKQPSIGFSDEEINKERKVEHESSGVAFTNHPSYCRSVRLLYFRYETAFAILYSRASVVKFSLKYFISFAFVVVPLPYMDLQMSDISSNKFPKEIRIIFPNTSFSWGQSQVNRKAGVLKYKEKKKSRKFEKRIRYAYRKAYAEKRPRVKGRFAKRQDLTSEGHVALN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0980 320 SMART bboxneu5 61 108 IPR000315 GO:0008270
Glsi02g0980 320 SMART bboxneu5 14 56 IPR000315 GO:0008270
Glsi02g0980 320 ProSiteProfiles Zinc finger B-box type profile. 14 65 IPR000315 GO:0008270
Glsi02g0980 320 ProSiteProfiles CCT domain profile. 266 308 IPR010402 GO:0005515
Glsi02g0980 320 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Glsi02g0980 320 CDD Bbox1_BBX-like 65 108 - -
Glsi02g0980 320 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Glsi02g0980 320 Pfam CCT motif 266 308 IPR010402 GO:0005515
Glsi02g0980 320 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 310 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0980 Glsi-ChrGlsi02 6499703 6501186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0980 15 308 C2C2-CO-like Transcription Factor Family AT3G02380 38.679 8.66e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi02g0980 zf-B_box 3.3e-06 No_clan