Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0972 ATGAAAGTTCGATCAGTGAAACTGAGGGAAGCCCACAAGGCCGCTAGCAATGACCGCCCTTCTTTCTGCTCCATTTTGTGGGACCAACAAGCTCAACACCTCGTCACCGCATGCTCTTCTGATGTCTCCATCTCAATTCACGACCCTCTCCTTCCTTCATCTACCCCGAAGATCCTCAGCCACCACCGCGATGGCGTTACCGCTTTGGCTCTTAGCCCCAACTCTACTTGTCTTGCATCCGGATCCGTCGATCACTCCGTCAAGCTCTACAAGTTCCCAGGTGGAGAATTCCAGACTAATATTACCAGATTCACACTTCCAATACGTTCCCTAGCATTTAATAAATCAGGAAGTATGTTAGCAGCAGCTGGTGATGATGAGGGCATTAAACTTGTTAATACAGTCGATGGTTCTATTGCAAGGGTTCTCAAAGGGCATAAAGGGACTGTCACTGGCTTAGCTTTTGACCCCAATGGTGAATACTTGGCATCTATGGATTCAACTGGAACTGTTATTTTGTGGGAACTTCACTCAGGAAGAATAGTTCATAACCTTAAAGGCATCGCTTCTGACACTAGAGCAGATGTTTCTACAATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTGGCTGTTCCAGGGTTGAGAAATGATGTTGTAATCTATGATAGAGACACTGCCGAGAAGTTGTTTTCATTGAGAGGTGATCACATACAACCTATATGTTTCTTGTCTTGGTCACCAAATGGCAAGTACATGGCTACTTCTGGCTTAGATAGGCAGGTTCTAATCTGGGATGTTGATAGGAAGCAGGATATTGATAGGCAAAAATTCAATGAAAGAATATGTTGCATGGCTTGGAAGCCAATTGGTAATGCATTAGCGGTAATTGATGTCATGGGAAAATATGGTATCTGGGAGTCTGTTATTCCTTCATCTATGAAATCCCCAACAGAGGGTGTTCCTATGCTATCTAAGAACAGTAATGGGCTTCTTTTGTTTGATGAGGATGATCCAGACCCTTGTGTAAGCGGAAGTTTAAGTGATCTTGGTGAAGATAGCAATGATGAGTCTGAACCACCTAGCAGGAAAAGATTACGCAGGCAGTCTTTGAGTGAGGAAAACTTTGATGAGGATGGCAGTGATGAAATGGCTTTATTTCCAAAGGTTGAATCTCATAAAAAACCAAATCGCATGCACAAAGAAAAATTGGATAGTGTGAATGTGGGACTTAAGAGCACAATGATGACATGTAAGTCAAATATGCAGGAGACATTTCAGCCAGGATCTACTCCTGTGCAGCTTGGGAAAAGGCACTTTTTATGTTACAATATGCTTGGTTGTATAACCACTGTTGAACATGATGGATACTCCCACATAGAGATTGATTTTCATGATACTGGCAGCAGTCCACGAGTTCCAGCAATGACTGACCATTTTGGATTTACAATGGCTGCCTTAAATGAGAATGGGAGCGTCCTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACTCTCATGTATCGTCCATTTAGTAGTTGGGCAAATAATAGTGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCTCTTGGTGCTGCTTGGGTGGCTGCAGTAACTAGTTTTAATTATCTTCGCATCTTTACTGAGGCTGGTTTGCAGAGACATGTTATTACGCTGGATGGGCCAGTGGTGACTGCATCAGGTTTCAAGGACAAACTTGCGGTTGTCAGTCATGCCTCTGATTGTGTTTCTAATGATCAGATGCTAGAGTTTAGAGTATTTAATATACCTAATGAAACCCAGCCCCTTAAAGGCCGCTTGCCATTAACTCCTGGTTCATCGCTAACATGGTTTGGATTTAGTGAAGAAGGTCAACTGAGTTCCTATGATTCCAAGGGTGTGCTCAGAGTGTTTACAAACCAATATGGTGGTAGCTGGCTCCCACTTTTCAGTGCTAGAAAAGAGAAGTCAGATGAAAACTACTGGGTGGTGGGGTTGAATGCGAGCAAGTTGTTTTGTGTGATATGCAAAAAACCTGACATTTTCCCCCAGGTGATGCCTAAACCAGTTCTCACTCTACTGAATCTTTCATTTCCTCTTGCTTCCTCTGACCTGGGATCGGAAGCCCTTGAAAATGAGTTCTTAATGAACAGCATGCATCTTTTTGAGATTCAGAAGAGAATGGAAGAAATGGCTAATGCTGGTTTGGACACCAGTTCACTTGATGACAAGGCATTCAATCTGGAAGCAGCACAGGATAGAATCATACTTAGGCTTATTGCATCCTGCTGCAATGGAGATAAGCTGGTGAGAGCCACTGAACTTGTGAAGCTTTTGTCACTGGAAAAATCAATGAAAGGTGCAATCAAACTTGTTACAGCTCTGAAGCTTCCAAACTTGGCGGAAAGGTTCAGTAGCATATTAGAGCAAAGGCTACTCGATGAAATGAACAGAACTAAAGAAACCAACCTCCAAGAAAACCGTACTGCACCCATCCCAGCTGATGTTTCACATAGCAGAAGCAAGGTCCTAACTCAGACTGTAGCATCAGACACAGTTAAGATGGCATCGTCACCAAATTTATCTGCTCCTTTGTTGACAAAGAAAGTCAAATCACAAGAGGAAGCCAAAGCTGGAGTAGATAACACTGCGGCGAATGATTTTGTGAAGTTAAAGAATACCGGGACTGATTTAAATGATAGGGAGGGGAAGGTGGGGGAGATCCGTCAGGTCCAAACTCATCATCCACAAGATCCTTCTATAAAGTCATCAGATAAGCAGGAAATAAAGAAGTTAGAGGCAAGTATTGCACAATCAAGTCGCCCGTCCAATCCATTTTTGAAGTCATCCATCAACCCACGCCCCACGGATTCCCACCGCAGTTCCTTCACCTTGATACCTCAGAAACCTTTCATAACGCCAACAATGGCAGATGTCACCTACCTTCGCTTACACGAACCAGATGACGATCCTCACATTCCTGAGCAAACCCTAACTCTTGATTCCATTCCCTACTGGTCCCATAACGATTTCGATTTCTATGCTTCCGATCCAGAATTTCCTCCGGCTGATCACTCCCTCCACGCTCACAGCACCTCTCGTGATGGTCGCTTGTCTCAACAATTTGAATCCACTATATCTGTACCAGGTGACGACGACTTCTCGGACCGGGGTTCGATCCCAAACACCGATCTACTGGACCGCGAAAACCAGGTAAATTTCGTTATGGATCTATTTCAACAAAGAGTTGAGCAATCACAGGTCATGGGTCATAGCGATTTGGTCTCCGAAGTGCTAAATGATTCGACTTTTGGTGTTATTGAAGGACACTGTGATGTGGGTATTGATGGTTTGGGTCTGGATTTGGGACTAGGTTTAGGATTTGGTGTCGAGAGGGATTCTTTGCATGGCGATGACAATAGTGGATTTATAGTTGAAAATTATGGTTCTGTTGGTGATGGTTGTGACGATTTCTTCATTGGGAGGAGGGTTTCTGGATCTGAATCCGCGGAGGCACCGTCTACGGCAAGCAGGATGCGGCCTTTCGAGAACTGTGTTCAGCTTCTGGGCGTTGGATTGGATTCTGATGAGGAGGGGAATGGGGGTTTGGGTATGGATGTGCATTCGGAAGACGATTATAATATGCACGACGAGAACGACGATGTTGCTAGCATCCCTCTCTGTTGGGATTCACTTCAGTTGGAGGATAACAGGGAAAATAACGAAGATTTCGAGTGGGAAGAAGTGGATGGCCGAATTGACGAGAGGGAAGTTTTGAGCATGTTCACGGCTGAGGATGATAGGTCGATTTCAGTTTCAGTGTCACCAATTATTGGGCTTGAAGAAGAAGTAAGCGTTGGGAGGGTGGGAGGTATGGAAAATTTGGGGTGGGAAGTGTTGTTGAATGCCAATAATTTGGACACGAACCCTGATTTGGACAACGATGCAGAACCTTATTTTGGTGATCATGATGACTATATTTATACTGCAGAGTATGAAATGATGTTTGGCCAATTTGCTGATAACGAGAACCCCTTAGTGGGTAGGCCTCCAGCTTCGATATCTGTTGTTCAGAATCTTCCATCAGTGGTTGTGACCAAAGAAGATGTTGATAACAATAACGCACTTTGTGCAGTTTGTAAGGATGAATTTAGTGTTGAGGAACAAGTAAAACAGTTGCCATGTTCACATCGCTACCATGGTGAATGCATTATACCATGGTTGGGAATTCGGAATACTTGCCCTGTCTGCCGTTATGAGTTTCCCACCGATGATGCTGATTATGAACGTAGGAGGATACAAAGATCTGGCCGTAGCTTGTGA 4341 0.4414 MKVRSVKLREAHKAASNDRPSFCSILWDQQAQHLVTACSSDVSISIHDPLLPSSTPKILSHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFQTNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLVNTVDGSIARVLKGHKGTVTGLAFDPNGEYLASMDSTGTVILWELHSGRIVHNLKGIASDTRADVSTMNVLCWSPDGETLAVPGLRNDVVIYDRDTAEKLFSLRGDHIQPICFLSWSPNGKYMATSGLDRQVLIWDVDRKQDIDRQKFNERICCMAWKPIGNALAVIDVMGKYGIWESVIPSSMKSPTEGVPMLSKNSNGLLLFDEDDPDPCVSGSLSDLGEDSNDESEPPSRKRLRRQSLSEENFDEDGSDEMALFPKVESHKKPNRMHKEKLDSVNVGLKSTMMTCKSNMQETFQPGSTPVQLGKRHFLCYNMLGCITTVEHDGYSHIEIDFHDTGSSPRVPAMTDHFGFTMAALNENGSVLANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWVAAVTSFNYLRIFTEAGLQRHVITLDGPVVTASGFKDKLAVVSHASDCVSNDQMLEFRVFNIPNETQPLKGRLPLTPGSSLTWFGFSEEGQLSSYDSKGVLRVFTNQYGGSWLPLFSARKEKSDENYWVVGLNASKLFCVICKKPDIFPQVMPKPVLTLLNLSFPLASSDLGSEALENEFLMNSMHLFEIQKRMEEMANAGLDTSSLDDKAFNLEAAQDRIILRLIASCCNGDKLVRATELVKLLSLEKSMKGAIKLVTALKLPNLAERFSSILEQRLLDEMNRTKETNLQENRTAPIPADVSHSRSKVLTQTVASDTVKMASSPNLSAPLLTKKVKSQEEAKAGVDNTAANDFVKLKNTGTDLNDREGKVGEIRQVQTHHPQDPSIKSSDKQEIKKLEASIAQSSRPSNPFLKSSINPRPTDSHRSSFTLIPQKPFITPTMADVTYLRLHEPDDDPHIPEQTLTLDSIPYWSHNDFDFYASDPEFPPADHSLHAHSTSRDGRLSQQFESTISVPGDDDFSDRGSIPNTDLLDRENQVNFVMDLFQQRVEQSQVMGHSDLVSEVLNDSTFGVIEGHCDVGIDGLGLDLGLGLGFGVERDSLHGDDNSGFIVENYGSVGDGCDDFFIGRRVSGSESAEAPSTASRMRPFENCVQLLGVGLDSDEEGNGGLGMDVHSEDDYNMHDENDDVASIPLCWDSLQLEDNRENNEDFEWEEVDGRIDEREVLSMFTAEDDRSISVSVSPIIGLEEEVSVGRVGGMENLGWEVLLNANNLDTNPDLDNDAEPYFGDHDDYIYTAEYEMMFGQFADNENPLVGRPPASISVVQNLPSVVVTKEDVDNNNALCAVCKDEFSVEEQVKQLPCSHRYHGECIIPWLGIRNTCPVCRYEFPTDDADYERRRIQRSGRSL 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0972 1446 SMART WD40_4 52 91 IPR001680 GO:0005515
Glsi02g0972 1446 SMART WD40_4 178 224 IPR001680 GO:0005515
Glsi02g0972 1446 SMART WD40_4 2 48 IPR001680 GO:0005515
Glsi02g0972 1446 SMART WD40_4 227 267 IPR001680 GO:0005515
Glsi02g0972 1446 SMART WD40_4 94 133 IPR001680 GO:0005515
Glsi02g0972 1446 SMART WD40_4 136 175 IPR001680 GO:0005515
Glsi02g0972 1446 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 956 - -
Glsi02g0972 1446 SUPERFAMILY RING/U-box 1363 1430 - -
Glsi02g0972 1446 SUPERFAMILY WD40 repeat-like 23 308 IPR036322 GO:0005515
Glsi02g0972 1446 Pfam Ring finger domain 1383 1424 IPR001841 -
Glsi02g0972 1446 Pfam Minichromosome loss protein, Mcl1, middle region 426 706 IPR022100 -
Glsi02g0972 1446 FunFam Transducin family protein / WD-40 repeat family protein 196 323 - -
Glsi02g0972 1446 MobiDBLite consensus disorder prediction 914 968 - -
Glsi02g0972 1446 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Glsi02g0972 1446 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Glsi02g0972 1446 SMART ring_2 1383 1423 IPR001841 -
Glsi02g0972 1446 FunFam E3 ubiquitin-protein ligase RING1-like 1344 1430 - -
Glsi02g0972 1446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Glsi02g0972 1446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Glsi02g0972 1446 MobiDBLite consensus disorder prediction 939 968 - -
Glsi02g0972 1446 CDD WD40 27 297 - -
Glsi02g0972 1446 MobiDBLite consensus disorder prediction 344 385 - -
Glsi02g0972 1446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1345 1430 IPR013083 -
Glsi02g0972 1446 ProSiteProfiles Zinc finger RING-type profile. 1383 1424 IPR001841 -
Glsi02g0972 1446 Gene3D - 195 309 IPR015943 GO:0005515
Glsi02g0972 1446 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Glsi02g0972 1446 MobiDBLite consensus disorder prediction 357 376 - -
Glsi02g0972 1446 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Glsi02g0972 1446 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Glsi02g0972 1446 Pfam WD domain, G-beta repeat 57 90 IPR001680 GO:0005515
Glsi02g0972 1446 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Glsi02g0972 1446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Glsi02g0972 1446 Gene3D - 2 194 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0972 Glsi-ChrGlsi02 6440803 6448725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0972 982 1430 C3H Transcription Factor Family AT5G60820 35.378 6.83e-62 216