Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0944 ATGGATTATCTTCCATTCAATCTTATTGGTTTGTCAGGAATTAAAGAGCTTCAAAATCTTGAGGATTCAGGGAGGCTGATTTCTTTGCTTTTATATCTTTCTTTTGCTGGTTATGCTTCTGAAGATAAGGGTTTTGTGTCCAATAATACACTCATTTCTCCTAATACGCTTGCCAGAAGCAAGAGTTCCTTTCTGGGTTCGGAATTGAAAACCCCATGTAGTTTTTCCAACGACATGTTAGCCTCAGATCAACAACATATAGGGAATCAAGGCTCCGAGGAATTGGATTTTCCAGAAATGTCGCGGAAACAATTTTCCGATGATCCGATTGGCAGTGTTCCGAGCAGGAAGTTCGATTGTGTTATGACTGTCGTAAATACATTTTCTGCAGGTCAAGACTCAAATTCAAAGCTTTCAAACTCTGTGGTTGACTCTAACAGCCGGGATTCCCTCATTGATTTGAAGCTGGGACGATTTGGTGATCTCCGAGATGCTAATGACGCTTCATTTCCCAAAGTTACCCCAATTTTGTCTTCGTCCGAGTCATCTACGCCCCCTAAGAGAGTGCGAACTTATGGGTTGCAATCACAGACTTCTCATTGCCAAGTCTTTGGCTGCAACAAGGATCTAAGCGCCTCTAAAGACTACCACAAGAGGCACAGAGTTTGTGAGGTTCACTCCAAGACTGCTAAAGTTATTGTGAATGGCATCGAGCAGAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGGTGAATTTGACGATGTTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCATAACGAGCGTCGTAGAAAGCCACAAGGGGGTATTCAATCTGGAAAGGCCAGGAGGTTGCTTCAGCCATATAGCGATAGCAGATTCCAGGGTACCATGCGAACAAAAGCGTCTTTTATCTGCCCAGAGATTCTCCCTGGTGGTGTTTTGCATTCTGAGAAATATGGTACTGATAACTGGTGGAGACCTATAAAGGTCGAAGATGGGACTGATTTTAGGAATATGTCTGCTATTCCTATCACAAATGGATATCCTCAATCAAGATCTTTGTTTCCTTCATATGCTGAAAAGCAATTTCCCTTTCTAAACGAAAATGGTGCTACATCCACTACAGGAAGCATTTTCTGTGAGAACAATAATCAATATCCACCTGCTCTCGGAGACCCTCATTCTGGGCCACGGTCATTATTCCAGGACACCTTCTTAGGAAGTGAGGACTTCAATGTTTTTGATACATCCTCAACCATGCAAGGATTATCGGGAATCTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAGTCCCAGAACTCTTCGAACCATTCGTCAGGAATTCTCATGGCTCACACCATGGTTATTCCAGGCCGCCACAGCCATTACAGCATGAGTCAGGTCTCTGAAAAGATTGTAGGAATAAGATCACAGGCTGCCACAGGTGGGGTGTCAGGTAGCTTCCCATCAGAAATAAGTCATTCTGATGGAAGTCATCCTGTTCGTGTATTGATATCAGAAAATGATGATATTGTCAACTTAGAAATGGAAGATGGAATTTTCCAAGGGTCAGATTTTCTGAATATGAAAAATCGTCTTTCCTGTGAAGATGGCCCCACTATTGATCTGCTTCAACTGTCATCTCAACTCCACCGAGTTGAGCATCAAAGGCAATCCTTGCAGCAGAAGCAAGAGAACGATTCTGTTTGCTCCCTCCGGATTACTTAG 1743 0.4349 MDYLPFNLIGLSGIKELQNLEDSGRLISLLLYLSFAGYASEDKGFVSNNTLISPNTLARSKSSFLGSELKTPCSFSNDMLASDQQHIGNQGSEELDFPEMSRKQFSDDPIGSVPSRKFDCVMTVVNTFSAGQDSNSKLSNSVVDSNSRDSLIDLKLGRFGDLRDANDASFPKVTPILSSSESSTPPKRVRTYGLQSQTSHCQVFGCNKDLSASKDYHKRHRVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLGEFDDVKRSCRKRLAGHNERRRKPQGGIQSGKARRLLQPYSDSRFQGTMRTKASFICPEILPGGVLHSEKYGTDNWWRPIKVEDGTDFRNMSAIPITNGYPQSRSLFPSYAEKQFPFLNENGATSTTGSIFCENNNQYPPALGDPHSGPRSLFQDTFLGSEDFNVFDTSSTMQGLSGISDSGCALSLLSSQSQNSSNHSSGILMAHTMVIPGRHSHYSMSQVSEKIVGIRSQAATGGVSGSFPSEISHSDGSHPVRVLISENDDIVNLEMEDGIFQGSDFLNMKNRLSCEDGPTIDLLQLSSQLHRVEHQRQSLQQKQENDSVCSLRIT 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0944 580 Gene3D - 193 262 IPR036893 GO:0003677|GO:0005634
Glsi02g0944 580 FunFam Squamosa promoter-binding-like protein 14 192 262 - -
Glsi02g0944 580 Pfam SBP domain 201 274 IPR004333 GO:0003677
Glsi02g0944 580 SUPERFAMILY SBT domain 200 278 IPR036893 GO:0003677|GO:0005634
Glsi02g0944 580 Coils Coil 548 568 - -
Glsi02g0944 580 ProSiteProfiles Zinc finger SBP-type profile. 198 275 IPR004333 GO:0003677
Glsi02g0944 580 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 106 567 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0944 Glsi-ChrGlsi02 6293823 6296919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0944 152 318 SBP-box Gene Family AT1G69170 54.491 2.24e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi02g0944 SBP 1.7e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0944 02 6293823 6296919 Glsi02g0944 02 6293823 6296919 ECH