Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0937 ATGGGCTCAACGAGTGAAAGAGCGCCTCTCTTAGAGGGCAAGGAAGGGGGAAAGAGGGATGATGACTCGGTGGCTCAGTTGACAGACCTTGAACGTGGGGATGCAGCAGCAAAAGTGGGATTCTTCCGAGTGCTTTCACTTGCAAAGCCTGATGCTGGGAAGTTGATAGTTGCAACGTTGGCCCTATTGATAGCATCTACATCAGATATTTTAATTCCAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGATATTCTCAAACTCCTGAAGCAAAAGCTAAAGCTCTGGATGCTGTCAAGGACACCATACTTTCTATCTTACTGATTGTTGTTGTCGGATCAGTTTGCACAGCACTTGAAACATGGCTTTTTTCCTCAGCTAGTGAAAGGGTTGTTGCTCGGCTGAGAAAAAAATTGTTTAGTCACCTTATACTCCAGGAGATAGCCTTCTTTGATGTTACTCGAACTGGTGAAATTCTGAGTAGGCTATCTGAAGATACACAGATAATAAAAAATGCTGCAACTACCAATCTTTCTCAGGCCTTGAGTAACTTAGCGACTGCATTTATTGGCATTGGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTCGTGCCTGCTACTTTTGTTGCTGCTCGTAAATTTGGCTCATTCCTGGGTGAACTTTCTCATGAAACTCAAGCTGCTGCTGCTGTAGCTGCTTCAATCGCTGAGGAATCCTTTGGTGCCATAAGTACAGTAAGATCTTTTGCCCAAGAAGAATATGAAATATCACGGTACTCTGAGAAAGTTGACGTGACACTTAAGCTTGGACTTAAGCAAGCTAAATTGGTTGGACTCTTTTACGGAGGCCTTTCTATAGCAACTACAATGTCAATTTTTGTAGTTGTTATATATGGAGCTTATTTGACAATCACAGGTTCCATGTCTGCCGGTGATCTTACATCTTTCATTCTTTATAGTCTTACAGTGGGACATTCTGTATCTGGTCTCTCAGGATTGTATACAGCAGTTATGAAAGCTGCGGGTGCAAGCAGACGGGTATTTCAACTTCTGGATCGTGTCTCATCAATGCCGAAGTCAGGAAACAAGTGTCCTCTGGGTGATCAAGATGGGGAAGTGGAACTTGATGATGTCTGGTTTGCATATCCATCACGTCCTAATGATATGGTACTTAAGGGAATAAAAATGAAACTGCGGTCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGCGGTGGTGGAAAGACTACAATTGCAAGCTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTCTGGTAGAAGTATCACACGCACATCTACACAGAAAGATCAGTATTGTGAGTCAGGAGCCGACACTTTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTCAACCCTGTTGATATAGAAAATGCAGCTAAAATGGCCAATGCACATGAATTCATATCGAAATTCCCAGATAAATACCAGACCCATGTTGGAGAGCGTGGGGTAAGGCTTTCGGGAGGACAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTTCTTCTGGATGAAGCCACTAGTGCCCTGGATGCTGAAAGCGAATATTTAGTACAGGATGCCTTGGAGTCTCTGATGAAGGGAAGGACAGTTCTAGTGATTGCTCATAGGCTATCAACTGTTAAAAGTGCTGATACTGTTGCAGTTGTTACTGATGGTCAAATAGTTGAGAGTGGCACCCATGAAGAGCTTCTCCGCATCAATGGTGTCTATGCTGCATTAGTCAGCAGACAATTGCAAGCTACAAATACTGATACATAA 1881 0.4285 MGSTSERAPLLEGKEGGKRDDDSVAQLTDLERGDAAAKVGFFRVLSLAKPDAGKLIVATLALLIASTSDILIPKFGGKIIDIVSGYSQTPEAKAKALDAVKDTILSILLIVVVGSVCTALETWLFSSASERVVARLRKKLFSHLILQEIAFFDVTRTGEILSRLSEDTQIIKNAATTNLSQALSNLATAFIGIGFMFATSWKLTLLALAVVPATFVAARKFGSFLGELSHETQAAAAVAASIAEESFGAISTVRSFAQEEYEISRYSEKVDVTLKLGLKQAKLVGLFYGGLSIATTMSIFVVVIYGAYLTITGSMSAGDLTSFILYSLTVGHSVSGLSGLYTAVMKAAGASRRVFQLLDRVSSMPKSGNKCPLGDQDGEVELDDVWFAYPSRPNDMVLKGIKMKLRSGSKVALVGPSGGGKTTIASLIERFYDPTKGKILLNGVPLVEVSHAHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNPVDIENAAKMANAHEFISKFPDKYQTHVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDALESLMKGRTVLVIAHRLSTVKSADTVAVVTDGQIVESGTHEELLRINGVYAALVSRQLQATNTDT 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0937 626 Gene3D - 378 623 IPR027417 -
Glsi02g0937 626 FunFam ABC transporter B family member 25 107 377 - -
Glsi02g0937 626 SMART AAA_5 407 601 IPR003593 GO:0016887
Glsi02g0937 626 MobiDBLite consensus disorder prediction 1 22 - -
Glsi02g0937 626 Gene3D ABC transporter type 1, transmembrane domain 107 377 IPR036640 GO:0005524|GO:0016020
Glsi02g0937 626 FunFam ABC transporter B family member 25 378 620 - -
Glsi02g0937 626 PIRSF ABC_prm/ATPase_B 4 626 - -
Glsi02g0937 626 Pfam ABC transporter 398 548 IPR003439 GO:0005524
Glsi02g0937 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 618 IPR027417 -
Glsi02g0937 626 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 617 IPR003439 GO:0005524
Glsi02g0937 626 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0937 626 CDD ABC_6TM_AtABCB27_like 58 354 - -
Glsi02g0937 626 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 34 622 IPR039421 -
Glsi02g0937 626 CDD ABC_MTABC3_MDL1_MDL2 380 618 - -
Glsi02g0937 626 Pfam ABC transporter transmembrane region 55 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0937 626 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Glsi02g0937 626 SUPERFAMILY ABC transporter transmembrane region 43 359 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0937 Glsi-ChrGlsi02 6255033 6260444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0937 72 624 Calmodulin-binding Proteins AT2G36910 38.214 5.52e-103 338