Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0925 ATGTCGAAATTACCCACCCCGGATGCCATTTCTATCTTGCTTGCGAACCCATCACCGGATTCTTCATCGGAGCTCCCCGAGATCGTCGTTCAAGTTCTGGATCTCAAGCAAAGCGGTAACAGATACATGTTTACTGCTGGTGATGGGAAAATGAAGCTAAGGGCAATTCTACCCTCAAGTCAGAATTCTCAGGTCATCTCAGGAAATATTCAGAATCTGGGTCTTATTTGCATCATTGACTATACTCTCAACGACATCCCAAATAAGTCGGAGAAATATCTTATTGTCACAAAATGCGAACCGGTGTCCCCTGCCCTGGAAACAGAGATAAAATATGAGGTTAAGAGTGAGGAAACTGGGATTATTTTGAAACCAAAGCAAGAGGATGAAATCAAAAGTGAGGTAAAAGGCGAAGGAGCTGGAATTCTTTTGAAACCGAAACAAGAAATCGTGACCAAATCTGCTGCCCAGATTGTACATGAACAACACGGAAATATGGTTCCTTCAGCACGAATGGCCATGACACGCAGGGTGCGTCCTCTTGTTTCCTTAAATCCTTATCAGGGTAACTGGACAATAAAGGTTCGGGTTACAAACAAAGGAAGCATGCGCACCTATAAGAATGCAAGAGGAGAAGGCTGTGTCTTCAACGTGGAACTGACGGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAAGCTGCAAGAAAATTTTATGAGAAATTTGTTCTGGGGAAGGTTTATTACATTTCCAAGGGTACATTAAAAGTAGCTAACAAGCAATTCAAAACTGTCCAAAATGATTATGAAATGACACTAAATGATAATTCTGAAGTGGAAGAGGCGACCAATGAAGAGAGTTTTGTCCCAGTAACAAGATTCAAGTTTGTCCAGATTGATCAGCTGGGTCCTTATGTTAACAGTAATGATCTTGTGGATGTCATTGGAATTGTTCAGAATGTGTCTTCAACAATGAGCATCCGTAGGAAGAGCAACAATGATAGTGTCCCAAAGCGGGATATTACTATTGCTGATGCGACAAAGAAGACTGTTATCGTGTCTTTGTGGAATGACCACGCGACTAAGGTAGGGCAAGAGCTGCTGGAAATTGTTGATAGTTCTCCTATTGTAGCAATCAAATCCCTCAAGGTGGGGGATTTTCAAGGTGTTACGTTGTCAACTATAAGTAAAAGTTTAGTGTTGGTAAATCCAGATATACCTGAAGCAAAGAAGCTCAGATGCTGGTATGAATCTGAAGGTAAAGATGCTTCATTGGCCTCTATTGGCTCAGGCTCAAGTCCGGCATCCAAGAATGGAATGAGATCAGTGTATTCTGACCGTGTTTCACTTTCTCACATAATCTCAAGCCCATCATTGGGAGAAGGCAAGCCTGCATTCTTCAGTATTAGAGCATATATAAGTTTTATCAAGCCTGACCAGACAATGTGGTATCGGGCTTGTAAAACTTGCAACAAGAAAGTCACTGAAGCCATTGGTGCTGGGTATTGGTGTGAAGGCTGCCAGAAAAATTATGAAGAGTGCAATTTAAGATACATTATGGTTGTAAAAGTAGCTGATGCTAGTGGAGAAGCTTATATCTCAGTCTTCAATGAAGAAGCTGAAAAGATTGTTGGGTGCTCTGCTGATGAGCTTGATAACCTTAAGTCACAGGAGGGAGAAGATAATCCATATCAATTAAAATTGAAGCAAGCTACTTGGACTCCTCATCTTTTCCGGGTTAGTGTTTCTCAGAATGAGTATATGAATGAGAAGAGGCAGAGGATAACAGCCCGGGCAGTTGTTCCGGTTGACTTTGCCGCCGAGTCAAGATTTCTCCTGGAAGAAATATCAAAGATGAGAGCTCAATAA 1875 0.4155 MSKLPTPDAISILLANPSPDSSSELPEIVVQVLDLKQSGNRYMFTAGDGKMKLRAILPSSQNSQVISGNIQNLGLICIIDYTLNDIPNKSEKYLIVTKCEPVSPALETEIKYEVKSEETGIILKPKQEDEIKSEVKGEGAGILLKPKQEIVTKSAAQIVHEQHGNMVPSARMAMTRRVRPLVSLNPYQGNWTIKVRVTNKGSMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNDNSEVEEATNEESFVPVTRFKFVQIDQLGPYVNSNDLVDVIGIVQNVSSTMSIRRKSNNDSVPKRDITIADATKKTVIVSLWNDHATKVGQELLEIVDSSPIVAIKSLKVGDFQGVTLSTISKSLVLVNPDIPEAKKLRCWYESEGKDASLASIGSGSSPASKNGMRSVYSDRVSLSHIISSPSLGEGKPAFFSIRAYISFIKPDQTMWYRACKTCNKKVTEAIGAGYWCEGCQKNYEECNLRYIMVVKVADASGEAYISVFNEEAEKIVGCSADELDNLKSQEGEDNPYQLKLKQATWTPHLFRVSVSQNEYMNEKRQRITARAVVPVDFAAESRFLLEEISKMRAQ 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0925 624 CDD RPA1_DBD_A 180 283 - -
Glsi02g0925 624 FunFam Replication protein A subunit 434 621 - -
Glsi02g0925 624 CDD RPA1_DBD_B 313 419 - -
Glsi02g0925 624 Gene3D - 6 112 IPR012340 -
Glsi02g0925 624 Gene3D - 432 621 IPR012340 -
Glsi02g0925 624 FunFam Replication protein A subunit 5 114 - -
Glsi02g0925 624 Gene3D - 175 284 IPR012340 -
Glsi02g0925 624 Pfam OB-fold nucleic acid binding domain 191 276 IPR004365 GO:0003676
Glsi02g0925 624 SUPERFAMILY Nucleic acid-binding proteins 447 621 IPR012340 -
Glsi02g0925 624 Gene3D - 291 431 IPR012340 -
Glsi02g0925 624 PANTHER REPLICATION FACTOR A 1, RFA1 191 584 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Glsi02g0925 624 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Glsi02g0925 624 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Glsi02g0925 624 SUPERFAMILY Nucleic acid-binding proteins 19 107 IPR012340 -
Glsi02g0925 624 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Glsi02g0925 624 CDD RPA1_DBD_C 456 620 IPR047192 -
Glsi02g0925 624 NCBIfam replication factor-a protein 1 (rpa1) 20 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Glsi02g0925 624 Pfam Replication factor-A protein 1, N-terminal domain 6 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Glsi02g0925 624 Pfam Replication protein A OB domain 308 404 IPR031657 -
Glsi02g0925 624 FunFam Replication protein A subunit 177 286 - -
Glsi02g0925 624 FunFam Replication protein A subunit 290 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0925 Glsi-ChrGlsi02 6155125 6158545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0925 6 620 Core DNA Replication Machinery Family AT5G08020 68.019 0.0 899