Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0917 ATGGCTATGGCTGCTCTGAGACGGGAAGGAAGGCGTTTCGCCCCTCTCATCTCTCCTCGACAGATTACCGCTCTCCGATCCTCTCTTGTCTCTGAGGAGCAAGTTCCCCTGGGAGTGCGCTCTATCTCAACTCAAGTAGTCAGAAATCGAATGAAGAGTGTGAAGAATATCCAGAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCAAAACTACGAGCTATTCAAACTAGAGCTGAAAATTCACGTGGCCTATGGCAGCCATTCACTGCCCTACTGGGTGACACTCCCAGTGTTGATGTGAAGAAGAATGTTATTGTTACCATTTCTTCAGACAAAGGTCTGTGTGGTGGAATCAATTCCACATCTGTCAAGATAAGCAGGGCTTTGCACAAATTGAATTCTGGGCCTGATAAAGAGTCAAAGTATGTTATATTGGGAGAGAAGGCAAAGGTTCAATTGATACGTGACTCAAAGAACAACATTGAGCTCATCATAACTGAGTTGCAGAAACATCCCTTGAATTATACTCAGGTCTCTGTCTTGGCAGATGACATATTGAAGAATGTGGAGTATGATGCCTTAAGGGTTATTTTCAACAAGTTCCATTCAGTTGTCTCATTTCTTCCGACCATGTCAACTGTGTTATCTCCTGAGATTGTGGAGAGAGAGACTGAATCTGGGGGAAAGCTTGGGGACCTGGACTCCTATGAGATAGAAGGTGGTGAGACAAAATCAGAAATACTTCAGAATCTTGCTGAGTTCCAGTTTTCTTGTGTCTTGTTCAATGGGGTATTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGTTCTAGCAGAAATGCTGGGGACATGCTTGACCGTCTCACCCTCACCTATAATAGAACTCGTCAAGCATCAATTACCACTGAATTGATTGAGATTATCTCTGGAGCATCAGCGCTCGAAGCTTGA 969 0.4438 MAMAALRREGRRFAPLISPRQITALRSSLVSEEQVPLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIVTISSDKGLCGGINSTSVKISRALHKLNSGPDKESKYVILGEKAKVQLIRDSKNNIELIITELQKHPLNYTQVSVLADDILKNVEYDALRVIFNKFHSVVSFLPTMSTVLSPEIVERETESGGKLGDLDSYEIEGGETKSEILQNLAEFQFSCVLFNGVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0917 322 ProSitePatterns ATP synthase gamma subunit signature. 306 319 IPR023632 -
Glsi02g0917 322 Gene3D - 67 279 - -
Glsi02g0917 322 FunFam ATP synthase gamma chain 275 317 - -
Glsi02g0917 322 NCBIfam ATP synthase F1 subunit gamma 43 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi02g0917 322 FunFam ATP synthase subunit gamma 67 279 - -
Glsi02g0917 322 CDD F1-ATPase_gamma 43 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi02g0917 322 Pfam ATP synthase 45 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi02g0917 322 PANTHER ATP SYNTHASE GAMMA CHAIN 30 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi02g0917 322 PIRSF ATP_synthase_gamma 10 320 - -
Glsi02g0917 322 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 317 - -
Glsi02g0917 322 PRINTS ATP synthase gamma subunit signature 267 286 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi02g0917 322 PRINTS ATP synthase gamma subunit signature 298 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi02g0917 322 PRINTS ATP synthase gamma subunit signature 193 210 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi02g0917 322 PRINTS ATP synthase gamma subunit signature 101 120 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi02g0917 322 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 320 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0917 Glsi-ChrGlsi02 6106798 6114401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0917 12 320 Primary Pumps ATPases AT1G15700 29.006 3.06e-28 110