Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0897 ATGGAAGAAGATCAAGAACTCAAACATGTCTGCAAGTCCTGCTGCAAGAGCTTCCCCTGTGGTAGATCCTTGGGAGGTCACATGAGGTCTCATATCACCAACAATTCAGCTGAATCAGAGGAAAAACTTGCAACGAGGAAGCTCTCCTCCTCTGTCATCAATGGCGGAAGCAAAATTAATGAAGCAGGAACTAACACTGGCTATGGTCTCAGAGAGAACCGCAAGAAGACTTGGAGAGCTTCAGATTTAAGTGAAGGCACTTCGCTCTTAGACAAGTTCTGCCAAGAGTGTGGTAAAGGTTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAATGTCACTCACAGAAAGAAAGAGTTTGTAATAGCTTGGAAGACCAAGATTCATGGACTGATGCTACCCAGAAGCAGGTTCTGGATAGTCAATCTGACAACGAAGCCGGTGCTCCCAATCGAAGAAGAAGATCAAAGAGAAGAACAAGGTACACGGCTTCTGCTACAACCTCGTCTTTGTCTTTTGCTAATCCTTCCTCTTCTGTTTCTGAGGTTGAGCAAGAGCAAGAAGAGGTGGCTATAAGCTTGATGATGCTTAGCAGGGACCTAGGTTCTTGGGGTGGTTCTGTTGCCGAGAACTCTGACAACTCTGGGAACTTCGAAGCTCGATCTTCAGTTCGAACTAATCTGGTTAGTAAGATTGAGGGCAAGAAGATGCCTATCTCCAATGGTTCTGAGAAAGCAAAACTGACCAACCGAAGTGACCAGAAGTGGGAAATTAGCAACGTGGATTCCTCGAAAGGAAAAAAATCAGAACTTCTGTCCTCTGAGTTTCCAAGAAATGGGTTTAGGTTTAATGGGTTCATCGAGAATGACAAAGCTAAGAAGCCTGAGCTGGATTTTCAGTCTGTATTGGAGGATTCTGAAGATGAGCAGGGGAAGAACGAGGTCAATGGAACAGAAATAGCTTCAATCAAGAGGAAGTTTGTGGGTTCTGAATTGAAGTCAAATTTCTCAAAGAATCTGGGAAACAAGCTTCCAGAAGCTGAGTTCAGCAAGAACTTTCACAAGAGAGGCAAGTTCGAGTGTACTACTTGCAACAAGATCTTCAGCTCCTACCAAGCTCTTGGAGGTCACAGAGCTAGCCATAAGAAAACCAAAGGCTGCTTCGCTTCAAGAAACGAGAGCAGCGAAAACAGCATCGAAACCGATCTCTCCCCTGACGCCACAACCGAAAGTAAGATCATAAAGAACAGTGAGTATGAACACGAACTGAGTTATGGTTTTGATCACGAGGCAGACATAGTTGCAGAGTCCAAGAAGAGTAAAGGGCACACATGCCCCATTTGCCTTAAGATTTTCTCGTCTGGGCAAGCCTTGGGTGGCCATAAGAGATCCCATTTGGGCGGTGGGTCTGCGAGTAGAAAGGATCAAACAGTTCAAGAAATCAGGGACTTTCTTGATCTTAATCTTCCTGCTGCTACGGAAGAAGAGAGCCACGGCCATTCTGAATCTTACAGACCCTGGTGGGTAAGAGGCAGCAGCCACAAGCAGGAGGCACTGGTAGGTCTGCTTGTTTTACCTGGAAAATTGTCGACGGGGTACTACCCTCTTTCTTATGCACTCGTGTTGGATCTGTTTACACAAATGTCAAATAGCTCCAGAAGTGATAGTGATACTTCCTTTAACGTGGAGAAGCTCTTGAAGATTGGGACAAGATGTAGAGAGCTCAGAAAAGAAAAGGACTTGTTACAAAGTTCAGAATCCCGAAATTTTGAACAAATTCAAATGCTAGAATTACATGAGAAGTCATTATCAGAATCTCATACTGAAGATAAGAAACACATCCAAAGGTTGGAAAAAGAGCTGCTGAATTGCTTTCAAGAAATAGGTGATTACCTTCAGGATCGAATAAATGCAAGGAACAAAGAGGTGAGCTATCTTGAAGAGCATGTTCAGAGCCTCAAGTTGAATTTAGAGGAGATGGAAAGCTTACATGAAGAGATTTTTAGGTTAAGGGAAGAGCTGCAGAGATCCAATTCAGAGGTGGTTTTTTTGATGCAGCAACTAGAGACTAAAGAAATGGAATTAGAAAAGTTAGCTATGTCCATAGAGAAACTGGAGGAATCAATTTCATCCATAACTTTAGAGTATCAGTGTGAAGTAGAGAGTATGAAGTTTGATATGATGGCCTTGGAGCAGAGTTTTTTTGAGGCTAAGAAAATCCAGGATGAAACTGTAGCAGAAAAAACTAGAATGAGCAGACTGATTGAAGAGCTCCAGGTTGCATTTCATGACACACAAAAAATTATTAGTTCTTTGAATGAAGAAAATAGGGAACTTAAAGAGAAGCTTAATACTTCCAACATGGAAACAACATATTTTTTTCGGAAGGTTGAAAACTGGCTGGACAAAAAGGACATATCACAACTCAATAGTCAGTCTTCCTTGAGCGAACGAGAGAGTAATTCTACCGCATCACAGTACATAAGGGCTTATGGAGAAGAATTGGGTTCAGTCCTTGCAAGATTGGCAACAGTCTTGGAGACAAATGCAGATTCAAAAGGAGAAATGGAGAAGATGACACGTCAGATGGAAGAATATGAATTTCTTGTGGAGAAATTTAAGGAAGAATTGAGAGAAGAAAAGTTAAAGGCCAAAGAAGAAGCAGAGGAACTAGCTCAGGAAATGGCAGAGATGAGATACCAGATTACAGGTTTGCTAGAAGAAGAATGCAAACGTCGTGCTTGCATTGAACAGGCATCTTTGCAAAGAATTGCTGAGTTAGAGGCGCAGTTTACCTCTATCCATCTACCTCTGAATTCTGCCATTTTGCCCTGCTTACTTGAAGAGAGAATGTCTGGTTTAAAGAAATCTCCCCTAAAGGTAGTTAAATCTAGTTCTGTTGATCCTGTCTATCCTGTTAAATCGTGGTCAAACCCATTTGATTCTGATGACGAGTCAAAGGAAAACCAAAAATATAATTCGTTAAGGAGGACTTCTGCAGAACCTGGTCTAGTTGCACCAGAAGTTAACACCAACCCTTTTGATGACTATGACGGAGATAGGAACTCTTCTTCATCATCTTCTTATGCCCTCCGATCAGCAGGCCGAAACAAGTATAGGAATGATTTCCGTGACTCAGGAGGAATAGAAAATCAATCAGTGCAAGAATTGGAGAATTTTGCTGTTTACAAGGCTGAAGAGACTACAAAATCAGTCAAAAACTGTGTGAAGATAGCAGAGGACATAAGAGAGGATGCTACCAAGACTTTAGTCACCCTCCATCAACAGGGTGAGCAAATTACCAGGTCTCACAATGTTGCTGCTGACATCGATCATGATCTTAGTCGGGCAGAAAAGCTTTTGGGAAGTCTTGGTGGCATGTTCTCCAAAACTTGGAAACCAAAGAAGACACGCCAAATTACAGGCCCTGTTATTGTTGCAGATGATCAGGTCAGAAGAAAGGGCAACCACTTGGAGCAGAGAGAGAAGTTGGGATTGACTTCGGCACCCAGAGGGCAGTCAAATCCCCGGACATTACCTCCTGAGCCAACAAATGCACTTGAAAAAGTTGAGATTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGGGAGAGCTGAAAGATATGGCTATTGACATGGGATCGGAAATTGAGAGGCACAACAAAGCCCTGGACCATGTATACAATGATGTGGATGAGTTAAATTTCCGCATGAAAGGTGCTAATCAACGTGGTCGTCGTTTACTGGGAAAATAA 3771 0.4254 MEEDQELKHVCKSCCKSFPCGRSLGGHMRSHITNNSAESEEKLATRKLSSSVINGGSKINEAGTNTGYGLRENRKKTWRASDLSEGTSLLDKFCQECGKGFHSWKALFGHMKCHSQKERVCNSLEDQDSWTDATQKQVLDSQSDNEAGAPNRRRRSKRRTRYTASATTSSLSFANPSSSVSEVEQEQEEVAISLMMLSRDLGSWGGSVAENSDNSGNFEARSSVRTNLVSKIEGKKMPISNGSEKAKLTNRSDQKWEISNVDSSKGKKSELLSSEFPRNGFRFNGFIENDKAKKPELDFQSVLEDSEDEQGKNEVNGTEIASIKRKFVGSELKSNFSKNLGNKLPEAEFSKNFHKRGKFECTTCNKIFSSYQALGGHRASHKKTKGCFASRNESSENSIETDLSPDATTESKIIKNSEYEHELSYGFDHEADIVAESKKSKGHTCPICLKIFSSGQALGGHKRSHLGGGSASRKDQTVQEIRDFLDLNLPAATEEESHGHSESYRPWWVRGSSHKQEALVGLLVLPGKLSTGYYPLSYALVLDLFTQMSNSSRSDSDTSFNVEKLLKIGTRCRELRKEKDLLQSSESRNFEQIQMLELHEKSLSESHTEDKKHIQRLEKELLNCFQEIGDYLQDRINARNKEVSYLEEHVQSLKLNLEEMESLHEEIFRLREELQRSNSEVVFLMQQLETKEMELEKLAMSIEKLEESISSITLEYQCEVESMKFDMMALEQSFFEAKKIQDETVAEKTRMSRLIEELQVAFHDTQKIISSLNEENRELKEKLNTSNMETTYFFRKVENWLDKKDISQLNSQSSLSERESNSTASQYIRAYGEELGSVLARLATVLETNADSKGEMEKMTRQMEEYEFLVEKFKEELREEKLKAKEEAEELAQEMAEMRYQITGLLEEECKRRACIEQASLQRIAELEAQFTSIHLPLNSAILPCLLEERMSGLKKSPLKVVKSSSVDPVYPVKSWSNPFDSDDESKENQKYNSLRRTSAEPGLVAPEVNTNPFDDYDGDRNSSSSSSYALRSAGRNKYRNDFRDSGGIENQSVQELENFAVYKAEETTKSVKNCVKIAEDIREDATKTLVTLHQQGEQITRSHNVAADIDHDLSRAEKLLGSLGGMFSKTWKPKKTRQITGPVIVADDQVRRKGNHLEQREKLGLTSAPRGQSNPRTLPPEPTNALEKVEIEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALDHVYNDVDELNFRMKGANQRGRRLLGK 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0897 1256 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 548 941 - -
Glsi02g0897 1256 FunFam SNAP25 homologous protein SNAP33 1188 1255 - -
Glsi02g0897 1256 ProSitePatterns Zinc finger C2H2 type domain signature. 445 465 IPR013087 -
Glsi02g0897 1256 MobiDBLite consensus disorder prediction 1167 1181 - -
Glsi02g0897 1256 FunFam SNAP25 homologous protein SNAP33 1048 1125 - -
Glsi02g0897 1256 Coils Coil 856 908 - -
Glsi02g0897 1256 MobiDBLite consensus disorder prediction 1016 1032 - -
Glsi02g0897 1256 MobiDBLite consensus disorder prediction 162 182 - -
Glsi02g0897 1256 ProSitePatterns Zinc finger C2H2 type domain signature. 361 381 IPR013087 -
Glsi02g0897 1256 MobiDBLite consensus disorder prediction 980 994 - -
Glsi02g0897 1256 Gene3D Classic Zinc Finger 356 465 - -
Glsi02g0897 1256 SUPERFAMILY SNARE fusion complex 1052 1122 - -
Glsi02g0897 1256 ProSiteProfiles Zinc finger C2H2 type domain profile. 443 470 IPR013087 -
Glsi02g0897 1256 SUPERFAMILY beta-beta-alpha zinc fingers 359 465 IPR036236 -
Glsi02g0897 1256 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Glsi02g0897 1256 SMART c2h2final6 92 114 IPR013087 -
Glsi02g0897 1256 SMART c2h2final6 443 465 IPR013087 -
Glsi02g0897 1256 SMART c2h2final6 9 31 IPR013087 -
Glsi02g0897 1256 SMART c2h2final6 359 381 IPR013087 -
Glsi02g0897 1256 Gene3D - 1189 1255 - -
Glsi02g0897 1256 SUPERFAMILY SNARE fusion complex 1194 1254 - -
Glsi02g0897 1256 Coils Coil 755 789 - -
Glsi02g0897 1256 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1191 1253 IPR000727 -
Glsi02g0897 1256 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Glsi02g0897 1256 MobiDBLite consensus disorder prediction 1154 1184 - -
Glsi02g0897 1256 MobiDBLite consensus disorder prediction 132 182 - -
Glsi02g0897 1256 CDD SNARE_Qc 1196 1252 - -
Glsi02g0897 1256 SUPERFAMILY beta-beta-alpha zinc fingers 9 114 IPR036236 -
Glsi02g0897 1256 MobiDBLite consensus disorder prediction 132 146 - -
Glsi02g0897 1256 Gene3D - 1048 1125 - -
Glsi02g0897 1256 Pfam C2H2-type zinc finger 443 466 - -
Glsi02g0897 1256 Pfam C2H2-type zinc finger 359 383 - -
Glsi02g0897 1256 Pfam C2H2-type zinc finger 9 31 - -
Glsi02g0897 1256 Pfam C2H2-type zinc finger 94 116 - -
Glsi02g0897 1256 MobiDBLite consensus disorder prediction 973 1032 - -
Glsi02g0897 1256 SMART tSNARE_6 1057 1124 IPR000727 -
Glsi02g0897 1256 SMART tSNARE_6 1186 1253 IPR000727 -
Glsi02g0897 1256 CDD SNARE_SNAP25N_23N_29N_SEC9N 1061 1123 IPR044766 GO:0005484|GO:0031201
Glsi02g0897 1256 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Glsi02g0897 1256 Coils Coil 643 715 - -
Glsi02g0897 1256 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Glsi02g0897 1256 ProSiteProfiles Zinc finger C2H2 type domain profile. 359 386 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0897 Glsi-ChrGlsi02 5716662 5730130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0897 393 495 C2H2 Transcription Factor Family AT1G26610 41.121 2.50e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g0897 zf-C2H2_6 1.6e-10 CL0361