Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0890 ATGGTTGAAATGAAGGAGGAAAATACAATTCCTTTGGAGATTGCAATCCAGAAAGAGCTAGCATATAGGAGGAAGGTTGCAGCGTTATATTTGCACCCCAATAGTGACTCCGCTCAAGGGCTTCTTCCTCTGCAGGATTTGAGGCTCACAAACTTCCCATCAAGTGTTCATCGAAACGTTCTTTTCAATTTTCAGGTTATGTCGTCAATTCAAACTTCCCATCAAGTGCCATTACCAGGTCCAAGTTCAAGTCCGTGCCTTTCGGGAACTAAACGAAAAGAACCAACACGCATTGCACATCATCCACCTCTGAAACATCAGCAACCATTTTGTGGAAGTCTCACTCACACAGCTCAAACAGATAATTTACACTGTAAAATCTGCCGAGTATCTTGCTCAAGTCCCTTAAATCTCAAGCAGCATATAAGATGTCACAAGCATAAGGCGAAACTGCAAGAGCTGCAGTTCATTCAGAAAAGTGGAAGAGAGGGAAAAAGAAATCAGAGGCAATGGTGTGAATTGTGCAAAGTTTCATGCACGAATGAAGATCTGCTCGAGATGCACTTGCAAGGTCAAAAGCATAAGGCGAAACTGCAAGAGCTGGAGTTCAGTCAAAAAAGTGGAAGAGAGGGCAAAAGAAATCAAAGGCAATGGTGTGAATTGTGCAAAGTTCCATGCATGAATGAAGACTTGCTGGACATGCACTTGCAAGGTCAAAAGCATAAGGCGAAACTGCAAGAGTTGGAATTCAATCAGAAAAGTGGAAGGGAGGGCAAAAGAAATCAAAGGCAATGGTGTGAATTGTGCAAAATTCCATGCATGAATGAAGACTTGCTGGAAATGCACTTGCAAGGTCAAAAGCATAAGGCAAAACTGCAAGAGCTAGAGTTCAGTCAGAAAAGTGGAAGAAAGGGAAAAGGAAATCAAAGGCAATGGTGTGAATTGTGCGAAGTTCCATGCATGAATGAAGGCTTACTGGAGATGCACTTGCAAGGTCAAAAGCATAAGGCTCTAGTGCAGAAGCTACAGATAATCAAAGAAGGCGGAGAGATCCCTAATCAGAGAAAATGGTGTGAACTCTGCAAAATATGGTGCATCATGGTGGATGCAAGTATTGTTAAAAGAAGTGGTGGGGAACGTGAAGAACTGTTCACATTTCTATACGAAGACGAGGCTGTAGACAACTTTAACGTCTCTTCTCATATTTATGGGTTTCTTCTGGTTGTTGTTTTGCTTTCTTCTGTAACATAG 1251 0.4205 MVEMKEENTIPLEIAIQKELAYRRKVAALYLHPNSDSAQGLLPLQDLRLTNFPSSVHRNVLFNFQVMSSIQTSHQVPLPGPSSSPCLSGTKRKEPTRIAHHPPLKHQQPFCGSLTHTAQTDNLHCKICRVSCSSPLNLKQHIRCHKHKAKLQELQFIQKSGREGKRNQRQWCELCKVSCTNEDLLEMHLQGQKHKAKLQELEFSQKSGREGKRNQRQWCELCKVPCMNEDLLDMHLQGQKHKAKLQELEFNQKSGREGKRNQRQWCELCKIPCMNEDLLEMHLQGQKHKAKLQELEFSQKSGRKGKGNQRQWCELCEVPCMNEGLLEMHLQGQKHKALVQKLQIIKEGGEIPNQRKWCELCKIWCIMVDASIVKRSGGEREELFTFLYEDEAVDNFNVSSHIYGFLLVVVLLSSVT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0890 416 SUPERFAMILY beta-beta-alpha zinc fingers 253 296 IPR036236 -
Glsi02g0890 416 SUPERFAMILY beta-beta-alpha zinc fingers 306 343 IPR036236 -
Glsi02g0890 416 Pfam Zinc-finger of C2H2 type 312 335 - -
Glsi02g0890 416 Pfam Zinc-finger of C2H2 type 265 288 - -
Glsi02g0890 416 Pfam Zinc-finger of C2H2 type 171 194 - -
Glsi02g0890 416 Pfam Zinc-finger of C2H2 type 218 241 - -
Glsi02g0890 416 Pfam Zinc-finger of C2H2 type 124 147 - -
Glsi02g0890 416 MobiDBLite consensus disorder prediction 74 90 - -
Glsi02g0890 416 SUPERFAMILY beta-beta-alpha zinc fingers 119 156 IPR036236 -
Glsi02g0890 416 SMART c2h2final6 311 335 IPR013087 -
Glsi02g0890 416 SMART c2h2final6 123 145 IPR013087 -
Glsi02g0890 416 SMART c2h2final6 217 241 IPR013087 -
Glsi02g0890 416 SMART c2h2final6 264 288 IPR013087 -
Glsi02g0890 416 SMART c2h2final6 170 194 IPR013087 -
Glsi02g0890 416 MobiDBLite consensus disorder prediction 74 93 - -
Glsi02g0890 416 ProSitePatterns Zinc finger C2H2 type domain signature. 125 147 IPR013087 -
Glsi02g0890 416 SMART ZnF_U1_5 214 248 IPR003604 GO:0003676|GO:0008270
Glsi02g0890 416 SMART ZnF_U1_5 261 295 IPR003604 GO:0003676|GO:0008270
Glsi02g0890 416 SMART ZnF_U1_5 308 342 IPR003604 GO:0003676|GO:0008270
Glsi02g0890 416 SMART ZnF_U1_5 120 154 IPR003604 GO:0003676|GO:0008270
Glsi02g0890 416 SMART ZnF_U1_5 167 201 IPR003604 GO:0003676|GO:0008270
Glsi02g0890 416 PANTHER OS06G0651300 PROTEIN-RELATED 164 210 - -
Glsi02g0890 416 SUPERFAMILY beta-beta-alpha zinc fingers 207 249 IPR036236 -
Glsi02g0890 416 SUPERFAMILY beta-beta-alpha zinc fingers 162 202 IPR036236 -
Glsi02g0890 416 Gene3D Classic Zinc Finger 255 304 - -
Glsi02g0890 416 Gene3D Classic Zinc Finger 209 254 - -
Glsi02g0890 416 Gene3D Classic Zinc Finger 164 208 - -
Glsi02g0890 416 Gene3D Classic Zinc Finger 115 163 - -
Glsi02g0890 416 Gene3D Classic Zinc Finger 305 353 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0890 54 337 C2H2 Transcription Factor Family AT5G61190 25.143 1.48e-11 64.7