Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0884 ATGGGCTGTATCAGTTCGAAGCAGGCGGTGTCGGTGACTCCTGCTATCGACCACTCCGGTGTGTTTCGGGGCAATGCCAGTACGGGTAATTCGGGAAGGAATTTGGTAGAGTCCGATAAGAAGAAGAAGACTGAGACTGTGAGACTGAGTAGAAGCGACGTGGGTGAGTCAGGGAGGGCGAGTTCAAATGGGGGTTGTGAATCTTTGAGCTTCAGATTGGGGAATCTGCAAAAGTATGTAGAGGGGGAGCAAGTAGCAGCGGGTTGGCCGGCTTGGCTTAGCGCCGTCGCTGGTGAAGCCATTCAGGGTTGGGTGCCCCTCCGAGCTGATGCATTTGAGAAACTGGAGAAGATTGGACAAGGTACATACAGCAGTGTCTTCCGAGCACGGGACCTTGAGACTGGGAAGACTGTGGCTCTGAAGAAGGTGCGGTTTGACAACTTTGAGCCAGAAAGTGTTAGGTTTATGGCTCGAGAAATAATGATTCTCAGAAGGCTTGATCATCCAAACATCATAAAATTGGAGGGCTTGATTACTTCCAGATTGTCATGTAGCATATACCTTGTATTCGAGTATATGGAACATGACATTACAGGGCTTTTGTCTTGTCCTGATATCACGTTTAGTGAATCCCAGATCAAATGCTACATGAAACAGTTGTTATCTGGACTTGACCATTGTCATTCACGGGGTGTAATGCATCGTGATATCAAAGGGTCTAATCTTCTGGTAAATAATGAAGGGATTTTAAAGGTGGCTGATTTTGGGTTGGCAAACTTCTCTAATTCTGGGCACAGGCAGCCCCTCACAAGTCGTGTTGTCACCTTATGGTACCGTCCTCCTGAACTTTTGCTGGGTTCAACTGACTATGGTCCATCTGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCGGAACTACTTGTTGGGAAGCCCATCCTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCCCCACCAGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACTTTGTTTAAGCCACAGCAACCATATAATAGTTGCCTCCGAGAGACCTTTAAAGATTTGCCTGCAACCAGTGTGAATCTACTACAAACTTTTCTTTCCATTGAACCATACAAACGAGCAACTGCCTCCTCTGCACTCTCATCAGAGTATTTCAAGACAAAGCCACATGCTTGTGACCCATCGAGCTTGCCAATATACCCACCTAGCAAAGAGATTGATGCGAAACACCGAGAGGAGTCAAGGAGGAAAAAGATCGGTGGAAGGGCTCGTGGACCTGAAACAAGAAAACCATCCAGAAAGCCACTGGGAGTCTGTAAATTAGCCCCGGCAGAGGATTTGGCAAGTCAAACTCAGAATTCCCAAAAGGAGAATGGCAGATCGGTCCACATCCTTAAAGAAGGGAGCACCAACATAGGTGAGGAGGAACCAAAGCCTTCTAGTGGTAAACCAGAAGATGCTTCCCATACAAAGAATGCATCTCAAGGAGATATTCCCTTTTCTGGACCATTGCAAGTTTCAACGTCAAGTGGTTTTGCATGGGCAAAAAGGCGTAAAGATGACACTTCAATAAGATCTCATTGTCGATCTATTTCAAGAGGACATATTGTCAATCCATTAGAATCTTCTGTACTAAATTCAAGGAATAATTTTGACTTTAGAAACTTGGAAAATAAGGATTGTGCGGGACACCCCAACACTAGGTTTCATGACCCACATGAAATTCCTAAGCTTCCAATGCAGAATCAATGGAGCAAGTTTGATCGCCCAGATTCATTTGATGCTTCTGATGAATACCACTCGCAAGAACTATCTATGGCACTTTATCATAGAGAAGATTCAGCATCCAAGAGAAGTAACCTGGATCAAGGAGAGAAGGTTGAATTTTCAGGACCCCTACTATCTCAAATGCATACAGTTGATGAGCTCTTAGAAAAACACGAGCGCCACATTCGCCGCACAGTCCGAAGATCTTGGTTTCAGAGAGGTAAGAAGCTTGGGAAGTAA 2040 0.4525 MGCISSKQAVSVTPAIDHSGVFRGNASTGNSGRNLVESDKKKKTETVRLSRSDVGESGRASSNGGCESLSFRLGNLQKYVEGEQVAAGWPAWLSAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARDLETGKTVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSCPDITFSESQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGHRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYNSCLRETFKDLPATSVNLLQTFLSIEPYKRATASSALSSEYFKTKPHACDPSSLPIYPPSKEIDAKHREESRRKKIGGRARGPETRKPSRKPLGVCKLAPAEDLASQTQNSQKENGRSVHILKEGSTNIGEEEPKPSSGKPEDASHTKNASQGDIPFSGPLQVSTSSGFAWAKRRKDDTSIRSHCRSISRGHIVNPLESSVLNSRNNFDFRNLENKDCAGHPNTRFHDPHEIPKLPMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSASKRSNLDQGEKVEFSGPLLSQMHTVDELLEKHERHIRRTVRRSWFQRGKKLGK 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0884 679 CDD STKc_CDK9_like 112 396 - -
Glsi02g0884 679 MobiDBLite consensus disorder prediction 497 516 - -
Glsi02g0884 679 Gene3D Transferase(Phosphotransferase) domain 1 195 435 - -
Glsi02g0884 679 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Glsi02g0884 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Glsi02g0884 679 MobiDBLite consensus disorder prediction 480 496 - -
Glsi02g0884 679 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0884 679 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0884 679 PANTHER CELL DIVISION PROTEIN KINASE 110 400 - -
Glsi02g0884 679 FunFam probable serine/threonine-protein kinase At1g54610 99 194 - -
Glsi02g0884 679 MobiDBLite consensus disorder prediction 400 516 - -
Glsi02g0884 679 FunFam probable serine/threonine-protein kinase At1g54610 195 435 - -
Glsi02g0884 679 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0884 679 MobiDBLite consensus disorder prediction 21 64 - -
Glsi02g0884 679 Gene3D Phosphorylase Kinase; domain 1 99 194 - -
Glsi02g0884 679 MobiDBLite consensus disorder prediction 35 52 - -
Glsi02g0884 679 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Glsi02g0884 679 MobiDBLite consensus disorder prediction 415 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0884 Glsi-ChrGlsi02 5636594 5641881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0884 104 428 Core Cell Cycle Gene Families AT5G10270 50.147 2.14e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi02g0884 Pkinase 4.5e-68 CL0016