Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0879 ATGGCGGAGGAATCGGCTTCGTCTTCCACTTTGTTGAGCATGGACGGTCTTGACCATGTGGAGGACTACGTTTCGGCAAACGAACATGAATGTATGACAAGGGAAACATTCCATCATATTTTTGAACTCGTGAAGAATGGCAATGTGGCATTTCGGGATAACTGTATGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAACATCAAGTCTGGTGATCCTGTTATACTCGGCAACCGAAGTGCAACTTATATCAGGATTAGCCAATTTCTAAAGCACAGGTCTCCATCGGCTTCAGAATATAAACCATTGAACGGGCTTGATCCTACAACACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTCAACATCCAAAGTAATTCAGTAAAACCATACGTTTTAAAGGCCAATGCTCTTTTCCTGCTGGAGCAATATGAAAGGGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTAGATCCATTTAGTAATTCTCTTCGGGCTTCTCTTTCAAATTTGGAAAGAGCAGTAGCTAGTTTGGTGGGGACTAGTACACATGGACAGCCAGAGCGTTCTGATGATTTTGATTGCACTCTTTGCCTCAAGTTACTTTATGAGCCTGTTACAACCACTTGTGGACATTCTTTTTGTCGTTCATGTCTGTTTCAGTCAATGGATCGTGGTAACAGATGCCCATTGTGCAGGACGGTTCTGTTTATCAGTCCTAGAACATGTTCTGTCAGCGTGACATTGAAAAATATTATACAAAAGAACTTTCCGGAGGAATATGCTGAAAGGAAGCAAGAGCAGGACAATTTGACCAACTTTGGCAGAGATATAATTCCTCTTTTTGTCATGGATGTTGTCATCCCATGTCAGAAGTTTCCACTCCAAATATTTGAACCTCGGTATAGACTTATGGTAAGAAGAATAATGGAAGGAAATCATCGGATGGGAATGGTTATAACTGATTCTACCACAGGTTCCGTAGCTGAGTTTGCCTGTGAAGTGGAAATCACTGAGTGTGAGCCACTTCAGGATGGACGTTTCTATATAGAGGTTGAAAGTCGCCGTAGGTTTCACATCATCCAATCTTGGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACAGGATACTATGCCATCAGATGGTACAAGAGAGAAAGACGAGTTACAGGAATTGACAAATGAGGCAGCAGAACATGCTCTGTCATGGATAAGAAGAGCTAAAGAAGCAGCAAGACATGATCGAAGAAGACTAGAGAGACTCCTGAATGTTGAAGTGATGATGCCCACGATACAAGACCCTGAGCGCTTCAGTTTTTGGCTTGCTACCTTGTCCAATCAGAGGCCTTCGGAAAAATTGGATCTCCTATCCATTAGAGATACCAAAGAGAGGATTAGACGTGGTCTGGCATATCTACAAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1467 0.426 MAEESASSSTLLSMDGLDHVEDYVSANEHECMTRETFHHIFELVKNGNVAFRDNCMEEAINFYSRANNIKSGDPVILGNRSATYIRISQFLKHRSPSASEYKPLNGLDPTTHAELGLKDAEKLVNIQSNSVKPYVLKANALFLLEQYERARDVILSGLQVDPFSNSLRASLSNLERAVASLVGTSTHGQPERSDDFDCTLCLKLLYEPVTTTCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSVSVTLKNIIQKNFPEEYAERKQEQDNLTNFGRDIIPLFVMDVVIPCQKFPLQIFEPRYRLMVRRIMEGNHRMGMVITDSTTGSVAEFACEVEITECEPLQDGRFYIEVESRRRFHIIQSWDQDGYRVAEVEWIQDTMPSDGTREKDELQELTNEAAEHALSWIRRAKEAARHDRRRLERLLNVEVMMPTIQDPERFSFWLATLSNQRPSEKLDLLSIRDTKERIRRGLAYLQAEEQGCRIQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0879 488 PANTHER RING FINGER PROTEIN 127 36 480 - -
Glsi02g0879 488 Gene3D - 281 382 IPR046336 -
Glsi02g0879 488 Pfam ATP-dependent protease La (LON) substrate-binding domain 282 479 IPR003111 -
Glsi02g0879 488 SUPERFAMILY RING/U-box 193 261 - -
Glsi02g0879 488 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Glsi02g0879 488 Gene3D - 417 480 - -
Glsi02g0879 488 SMART lon_5 281 480 IPR003111 -
Glsi02g0879 488 Gene3D Tetratricopeptide repeat domain 33 185 IPR011990 GO:0005515
Glsi02g0879 488 SMART ring_2 198 235 IPR001841 -
Glsi02g0879 488 SUPERFAMILY TPR-like 41 172 IPR011990 GO:0005515
Glsi02g0879 488 ProSiteProfiles Zinc finger RING-type profile. 198 236 IPR001841 -
Glsi02g0879 488 CDD RING-HC_LONFs_rpt2 195 239 - -
Glsi02g0879 488 ProSiteProfiles Lon N-terminal domain profile. 279 480 IPR003111 -
Glsi02g0879 488 Pfam Zinc finger, C3HC4 type (RING finger) 198 235 - -
Glsi02g0879 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 279 IPR013083 -
Glsi02g0879 488 SUPERFAMILY PUA domain-like 282 479 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0879 Glsi-ChrGlsi02 5599023 5606923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0879 182 239 C3H Transcription Factor Family AT1G74990 36.066 8.49e-11 58.2