Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0873 ATGGAGACTGAGGGCCTTAATTTGAACAAAATCTCTGCTGGTGCTGGCAACAATAGCAAGATTGGTGATGGGTTCATTGATAGAAGCAAAGTGAAAATTTTGTTGTGTGATAACAATGCCAAGAGTTCGGAAGAGGTTTTAACTCTTCTTTTGGGATGCTCTTATCAGGTTACTTCAGTAAGGTCAGCAAGGCAGGTAATTGATGCACTGAACGCAGAGAAGCAAGATATAGATATCATTCTAGCTGAAGTTGACCTTCCAATGAAGAAGGGCATGAAGATGTTGAAGTACATTGCACGGGACAAAGATTTGCATCGAATTCCTGTTATAATGATGTCGGCACAAGATGAGGTATCCGTTGTTGTCAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTGAAGCCTTTACGCACTAATGAACTGTTAAATTTGTGGACACACATGTGGAGACGGAGGCACATGCTTGGTCTCATAGAGAAGAACATATTGAACTATGACTTTGATCTGGTAGCATCAGATCCTAGTGATGCTAATACAAACAGTACCACCTTGTTCTCGGATGATACAGAAGACAAATCCAAAAGAAGCACTAATCCAGAGGCAGGAATGTCTATACAACAGGAACATGAGTCTACTGTTGCTGTTGTTGATGCTGTTGAGGAGCCTCTAGATGCTCATGCATCAGAATATCGGCCTGTTGTGCCTGGAATTAGTGATCGCCGAACAGGAAACCTTTCATCTGGACCAAGGAAGAGTGAACTAAGGATTGGGGAGTCATCGGCCTTCTTCAGTTATGTTAAAACAACCGTGCAGAAGAGCAACTCACAAGGGATTGCTCAAGTTCACAATAATACTGCTACATGTTTGGGGATGGAAGACGTGAACCAAGCATGTGCTCAACAAGGGGTTAATGGCCTTCAAACACATGAAAATGAAGAGACATATGAAAGGCCTTCTCAAGATGACTTACCCAGCAGCAATAGTATTCCTGATTCTTTTTACATTGAGAGGTCTTCTACTCCACCTGCATCAATGGGAATTTCAAAGCAAAAGTACTTCGAGGAAAAACATTTCCCTCAGAGTGTAATCCATCCAAGAAATCGAACTCACAGTTCTGAGATTGAATTATCTGGTACGCCTGCCCAACATGCATATCCATATTATATGTCTGGGGTTGTTAATCACGTTATGATGCCATCCTCAGCACAACTGTATCAGAAAAATCTCCAGGACCTACATAGTCATGCTAATACAACTATGATTGCACAGTACAATAATATTTCCCAATGTCCTCCTCATGCAACTGGGATAACTTCCTTCCCATATTACCCTGTGAGTATATGCTTACAACCTGGTCAGACGTCTACAGGTCATTCATGGCCATCATATGGATGTTCAAGTTCATCCGAAGTAAAATTAAGTAAAGTTGATAGAAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAGCGTTGCTTTGATAAGAAAATTCGGTATGTCAATCGTAAGCAACTTGCTGAAAGGAGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGAGTTAATGTGGATCTTAATGGACAACCTACTTCCACTGACTATGATGATGACGATGAAGAGGATGAAGAGGACCATATAATGAGAGATTCATCTCCTGAAGATGCTTGA 1683 0.4153 METEGLNLNKISAGAGNNSKIGDGFIDRSKVKILLCDNNAKSSEEVLTLLLGCSYQVTSVRSARQVIDALNAEKQDIDIILAEVDLPMKKGMKMLKYIARDKDLHRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRHMLGLIEKNILNYDFDLVASDPSDANTNSTTLFSDDTEDKSKRSTNPEAGMSIQQEHESTVAVVDAVEEPLDAHASEYRPVVPGISDRRTGNLSSGPRKSELRIGESSAFFSYVKTTVQKSNSQGIAQVHNNTATCLGMEDVNQACAQQGVNGLQTHENEETYERPSQDDLPSSNSIPDSFYIERSSTPPASMGISKQKYFEEKHFPQSVIHPRNRTHSSEIELSGTPAQHAYPYYMSGVVNHVMMPSSAQLYQKNLQDLHSHANTTMIAQYNNISQCPPHATGITSFPYYPVSICLQPGQTSTGHSWPSYGCSSSSEVKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGVNVDLNGQPTSTDYDDDDEEDEEDHIMRDSSPEDA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0873 560 Pfam CCT motif 480 522 IPR010402 GO:0005515
Glsi02g0873 560 Gene3D - 31 234 - -
Glsi02g0873 560 MobiDBLite consensus disorder prediction 321 346 - -
Glsi02g0873 560 MobiDBLite consensus disorder prediction 536 552 - -
Glsi02g0873 560 MobiDBLite consensus disorder prediction 312 346 - -
Glsi02g0873 560 ProSiteProfiles CCT domain profile. 480 522 IPR010402 GO:0005515
Glsi02g0873 560 MobiDBLite consensus disorder prediction 179 213 - -
Glsi02g0873 560 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Glsi02g0873 560 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Glsi02g0873 560 SMART REC_2 31 146 IPR001789 GO:0000160
Glsi02g0873 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 237 IPR045279 GO:0009736
Glsi02g0873 560 MobiDBLite consensus disorder prediction 526 560 - -
Glsi02g0873 560 SUPERFAMILY CheY-like 29 156 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0873 Glsi-ChrGlsi02 5580504 5585207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0873 20 559 Response Regulator Gene Family AT5G61380 51.429 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Glsi02g0873 Response_reg 1.1e-17 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0873 02 5580504 5585207 Glsi02g0873 02 5580504 5585207 ECH