Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0869 ATGTTGATGCTTATTAAGCGAAAATCCGTCCCAATCAATCTCAAGCACCCTTCAACGATTTTGAGGTCGACGTCCTTCCCACGGTCTTCTTCGCTTTCTCCGTCAGATTCATGTATTACAAACACTATTCTCGATTGCAGAACCCATGATGAGGCACTTCAGTACTTCAATGACGCTTCCAGACGAGTTAATACAGTTAAAAATCCCCAGCTTTACGCTGCTATAATCCACATCTTAACGGGGGCTAAGCTCTACAGAGAAGCTAGGACCTTGACAAAAGACCTCTTTCAGAAGCTCCAAAAGTCACGGAAACCCCACGGTGCGTGCTGTTTGCTTTTTGACGTTCTCAGTCGGTTAGATAGCTCTAAATTCAGCCCCGATGTATTTGGAGTGTTAATAGTTGCCTGCTGTGAGACGGGTTTTGTTGAGGAAGCCTTGTGGGTGTATAAACAGATGAAGGTTTTGCCTATGTTGCAGGCTTGCAATGCACTTTTACATGGGTTGGTAAAGATAGAAAGGTTTGATTCGATGTGGAAGATTTATGGGGACATGGTGTCTCGAGGTTTTTCTCCTACTGTGATCACGTATGGCATATTAATCCATTGTTCTTGTATTCAAGGTGACACGATGAAGGTACGCAAGTTGTTTGATGAAATGCTCGAAAAGCGGATTGAACCTACAGTTGTGATCTACACAATTCTTATACGTGCCCTTTGCAATGAGAGTAGAATGGCAGAAGCAGAGGACATGTTTGGGTTGATGAGAAAATCTGGTGTAGTTCCCAATTTGTACACTTACAATACTCTGATGGATGGGTATTGCAAGACGACTAATGCTAAACGAGCTTTTGACTTGTTTCAAGATATGCTACATTATGGTTTGCACCCAGATGTTGTGACGTTTGCTATACTAATAGATATTCTGTGCAAAATGGGTGAATTGAACGCTGCCCAAAACTGTTTTGCTTATATGGCAAAATTTGGTGTTGTTCCTAATGCGTATGCTTATAATTCTTTGATTGATGGCTCCTGTAAGGCAGGGAACTTGGATGAAGCAATGCGTTTACAACTAGAAATGGAAAGGTCTGAAATTTTGCCAGATGTATTCACATACAATATACTCATCAAGGGTCTGACTGACACGGGTAGATTGGAAGAAGCCAATGGATTATTGCAGAAAATGGACAAAGCAGAGGTCCTTGCAAATTCTGTGACATACAATATTATAATTGACGGATACTGTAAAGAAGGCAATATGGAGAGGGCTATTGAGGTGTGTTCCCAAATGACTGAAAGGAAAATAGAACCCAATGTTATCACATTTTCTACATTAATTGATGGGTTTTGCAAGATTAGAAACATAAAAGCTGCAATGGGTTTGTACACAGAAATGGTAATCAAAGGTCTTGTACCCGATGTGGTTGCTTACACGGCATTAATTGATGGCCATTTTAAGGATGGGAACACAAAAGAGGCTTTCAGGCTGCAAAAGGAGATGCTAGAGACAGGATTAACACCCAATGTATTTACAGTTTGCTGTTTAATTGATGGCCTTTTTAAAGATGGAAGGACTTCTGATGCAATTAAACTCTTCTTGGAGAAAACGGGAGCTGGTTACCCTGGAGATAATATGGATAACTTGGATAAGGATAATAGCAATTTTTCTCCAAACAGTGTGATGTGTGCCATTGTAATTAAAGGTTTGTGTAAGGATGGACGAGTCTTTAAGGCCACCAAGTTTTTTGCAGATATGAGATATCGTGGTTTACTACCAGACATGTTAGTTTATGCTAACATGCTGCAGGCACATTTCCAATCCAAGCACATGCTAGATGTGATGCTGCTGCATGCAGACATGCTAAAATTGGGCGTCATGCCAAATACTTTCATTAATCGGGTATTATCTAGGGGCTATCAGGAAAATGGATATATGAAATCAGTTCGTATGTGCTATGAGCATTTAATGGAACATGTTCAGTATAAAGATACTGCAATGGATAGCAGAAAAGTGAGTTCTAATGGCTCGCAGCCATGCAGGCCGACAGCGCAGTGGTATGGGGCGACGTTGACTTCCCAAGGGTTAATTATTCAGCCGTGCTTGCGTATTATGGAAACTGAAGAAATTCAAAGAGTTGGGAGATTTCATTCTGTATCAAAATTGATACTATGCGCCATTTCTGGAGCTCTTACGGGATGTTTTGCAATTGCCGGAGCCATCACAGGAGCTATTGCTGGTGCTTTAGCAAGTAGGGCTTCTGAGAGTGGTTTTCTCCGCGGAGCTTCATTGGGTGCCATCGCTGGGGCTATAATCTCTGTTGAGGTGTTGGAAGCCTCGCGTGCCTACTGGTATATGGAGCAAACCGGCTCACGGGGCTCATCATCTATGGCAGATTTCATAGAGCAACTTGTTCGTGGGAGGCTTGTAGAGGAACAATTTACACCAGCTTTATTAACTGCTTACAGTTGGCAGGTTGGCATTGCTAATGTAGTCTATGACGAGATTCATGATGTTCATAGCTTAGTATCATCAAGAGGATTGTCAGGGGATTCGTTGAAGAAGTTACCACACCACGTGATCTTAAAGGACATGAAGGCAGAGAACATCATCTGTACTATATGTTTGCAGGATATTGAAGAAGGAGAACTTGCAAGGAGCTTGCCTCGCTGTCACCATACGTTTCACTTAATGTGTGTGGACAGGTGGCTTGTCAAGAATGATTCGTGTCCAGTTTGTAGACAAGATGTATAA 2748 0.4189 MLMLIKRKSVPINLKHPSTILRSTSFPRSSSLSPSDSCITNTILDCRTHDEALQYFNDASRRVNTVKNPQLYAAIIHILTGAKLYREARTLTKDLFQKLQKSRKPHGACCLLFDVLSRLDSSKFSPDVFGVLIVACCETGFVEEALWVYKQMKVLPMLQACNALLHGLVKIERFDSMWKIYGDMVSRGFSPTVITYGILIHCSCIQGDTMKVRKLFDEMLEKRIEPTVVIYTILIRALCNESRMAEAEDMFGLMRKSGVVPNLYTYNTLMDGYCKTTNAKRAFDLFQDMLHYGLHPDVVTFAILIDILCKMGELNAAQNCFAYMAKFGVVPNAYAYNSLIDGSCKAGNLDEAMRLQLEMERSEILPDVFTYNILIKGLTDTGRLEEANGLLQKMDKAEVLANSVTYNIIIDGYCKEGNMERAIEVCSQMTERKIEPNVITFSTLIDGFCKIRNIKAAMGLYTEMVIKGLVPDVVAYTALIDGHFKDGNTKEAFRLQKEMLETGLTPNVFTVCCLIDGLFKDGRTSDAIKLFLEKTGAGYPGDNMDNLDKDNSNFSPNSVMCAIVIKGLCKDGRVFKATKFFADMRYRGLLPDMLVYANMLQAHFQSKHMLDVMLLHADMLKLGVMPNTFINRVLSRGYQENGYMKSVRMCYEHLMEHVQYKDTAMDSRKVSSNGSQPCRPTAQWYGATLTSQGLIIQPCLRIMETEEIQRVGRFHSVSKLILCAISGALTGCFAIAGAITGAIAGALASRASESGFLRGASLGAIAGAIISVEVLEASRAYWYMEQTGSRGSSSMADFIEQLVRGRLVEEQFTPALLTAYSWQVGIANVVYDEIHDVHSLVSSRGLSGDSLKKLPHHVILKDMKAENIICTICLQDIEEGELARSLPRCHHTFHLMCVDRWLVKNDSCPVCRQDV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Glsi02g0869 915 SMART ring_2 870 911 IPR001841 -
Glsi02g0869 915 Gene3D Tetratricopeptide repeat domain 360 467 IPR011990 GO:0005515
Glsi02g0869 915 Gene3D Tetratricopeptide repeat domain 542 691 IPR011990 GO:0005515
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Glsi02g0869 915 PANTHER ATPASE EXPRESSION PROTEIN 3 553 656 - -
Glsi02g0869 915 Pfam PPR repeat family 471 520 IPR002885 -
Glsi02g0869 915 Pfam PPR repeat family 331 378 IPR002885 -
Glsi02g0869 915 Pfam PPR repeat family 402 450 IPR002885 -
Glsi02g0869 915 Pfam PPR repeat family 226 275 IPR002885 -
Glsi02g0869 915 Pfam PPR repeat family 160 204 IPR002885 -
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Glsi02g0869 915 Gene3D Tetratricopeptide repeat domain 28 155 IPR011990 GO:0005515
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Glsi02g0869 915 Pfam PPR repeat 129 153 IPR002885 -
Glsi02g0869 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 832 915 IPR013083 -
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 369 400 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 404 438 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 439 473 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 559 592 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 264 298 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 474 508 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 194 228 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 299 333 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 229 262 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 160 193 IPR002885 -
Glsi02g0869 915 NCBIfam pentatricopeptide repeat 334 368 IPR002885 -
Glsi02g0869 915 ProSiteProfiles Zinc finger RING-type profile. 870 912 IPR001841 -
Glsi02g0869 915 Gene3D Tetratricopeptide repeat domain 468 536 IPR011990 GO:0005515
Glsi02g0869 915 Gene3D Tetratricopeptide repeat domain 292 359 IPR011990 GO:0005515
Glsi02g0869 915 Gene3D Tetratricopeptide repeat domain 156 221 IPR011990 GO:0005515
Glsi02g0869 915 Gene3D Tetratricopeptide repeat domain 222 291 IPR011990 GO:0005515
Glsi02g0869 915 Pfam Ring finger domain 870 912 IPR001841 -
Glsi02g0869 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Glsi02g0869 915 SUPERFAMILY HCP-like 278 503 - -
Glsi02g0869 915 SUPERFAMILY RING/U-box 851 915 - -
Glsi02g0869 915 Pfam PPR repeat 293 324 IPR002885 -
Glsi02g0869 915 Pfam PPR repeat 554 585 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0869 Glsi-ChrGlsi02 5564609 5570983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0869 716 915 C3H Transcription Factor Family AT1G74410 60.199 6.58e-75 243