Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0841 ATGGGAAGACCACCATGCTGTGACAAATTTGGGGTTAAGAAAGGGCCTTGGACTCCAGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACACGGACCAGGCAATTGGAGATCAGTTCCTACTGATACAGGTTTGATGAGATGCAGCAAAAGCTGCAGACTTAGATGGACTAACTACCTTCGCCCGGGTATCAAACGAGGTAACTTCACCGATCACGAAGAGAAGATGATCATCCACCTCCAAGCTCTTTTGGGCAACAAGTGGGCTGCCATAGCTTCCTATCTTCCGGAGAGGACAGACAATGACATAAAAAACTACTGGAATACCCATTTGAAGAAGAAGCTGAAGAACCTTCGACCCGGGATGGAGGGTAATGATCAAGAAGGACACTCATGTTCACAGGCAAAGGGACAGTGGGAGAGAAGGCTTCAAACAGATATCCACATGGCCAAGCAAGCCTTGTGTGAGGCTCTCTCCCTTGACAAGCCAACTCCCACTCCTGAGACTGAGACTAAGCCCTCCATTTCCTACCTCAGAAAACCCAACCAATTAGGATCCTCCTCATACGCATCAAGTGCCGATAACATAGCCCGATTGCTCCAAAACTGGATGAAGAAATCCCCGAACTCAGCCACTACAGGTTCCAATTCTAGTGTCACTACACCAGATCATCATACTTCTCTATTGAGTTTCAACTCCTCCAACTCTGATGTGTCGGTGGATGATCACAAGACCTATTTGACTAGAGAGACAAGCCTAGGCCTCTTCCAAGACGAAAGCAAGCCAAATTTGGATACGCAAGTCCCTCTCACGCTGCTGGAAAAATGGCTTTTTGATGATGGGGCAACTCAAGGCGACGAAGATCTAATGAACATGTCACTGCAGGGAAGTACAGCAGAGTTGTTTTAG 912 0.4715 MGRPPCCDKFGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTDTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNKWAAIASYLPERTDNDIKNYWNTHLKKKLKNLRPGMEGNDQEGHSCSQAKGQWERRLQTDIHMAKQALCEALSLDKPTPTPETETKPSISYLRKPNQLGSSSYASSADNIARLLQNWMKKSPNSATTGSNSSVTTPDHHTSLLSFNSSNSDVSVDDHKTYLTRETSLGLFQDESKPNLDTQVPLTLLEKWLFDDGATQGDEDLMNMSLQGSTAELF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0841 303 SMART sant 66 114 IPR001005 -
Glsi02g0841 303 SMART sant 13 63 IPR001005 -
Glsi02g0841 303 CDD SANT 69 112 IPR001005 -
Glsi02g0841 303 Gene3D - 69 154 - -
Glsi02g0841 303 CDD SANT 16 61 IPR001005 -
Glsi02g0841 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi02g0841 303 FunFam MYB-related transcription factor 13 66 - -
Glsi02g0841 303 Gene3D - 13 66 - -
Glsi02g0841 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi02g0841 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi02g0841 303 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi02g0841 303 MobiDBLite consensus disorder prediction 165 182 - -
Glsi02g0841 303 MobiDBLite consensus disorder prediction 208 239 - -
Glsi02g0841 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi02g0841 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi02g0841 303 MobiDBLite consensus disorder prediction 159 182 - -
Glsi02g0841 303 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi02g0841 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0841 Glsi-ChrGlsi02 5409504 5410688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0841 1 297 MYB Transcription Factor Family AT5G62470 54.520 7.03e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g0841 Myb_DNA-binding 1.8e-14 CL0123