Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0824 ATGGTGCATGTTTCGTTTTACCGTAACTATGGGAAAACCTTTAAGAAGCCTCGCCGTCCATATGAGAAGGAACGGTTGGATGCTGAGTTGAAGCTTGTGGGAGAGTATGGACTTCGCTGCAAGAGGGAGCTGTGGAGGGTTCAGTACGCTCTGAGCCGTATCCGTAATAATGCAAGGATGCTTTTAACCCTTGATGAGAAGAACCCACGTCGGATCTTCGAGGGTGAAGCTCTTCTGCGAAGGATGTTCCGTTATGGGCTTTTGGATGAGAGTCAGAACAAGCTCGATTACGTCTTGGCTTTGACCGTGGAGAACTTTCTTGAGCGTCGCCTTCAAACACTTGTGTTCAAATCAGGAATGGCTAAGTCAATTCATCATGCTAGGGTGCTCATCAGGCAGAGGCATATCAGGGTTGGAAGGCAGGTGGTGAACATCCCATCTTTCATGGTGAGGGTTGATTCCCAGAAGCACATTGACTTTTCACTTACAAGTCCACTTGGTGGCGGACGACCTGGAAGGGTGAAGAGAAGGAACCAAAGAGCTGCTGCTAAGAAGGCTGCTGGCGGAGATGGAGATGAGGAGGATGAAGATTAA 594 0.4882 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMFRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQRAAAKKAAGGDGDEEDED 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0824 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Glsi02g0824 197 SUPERFAMILY Alpha-L RNA-binding motif 12 158 - -
Glsi02g0824 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Glsi02g0824 197 MobiDBLite consensus disorder prediction 163 197 - -
Glsi02g0824 197 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Glsi02g0824 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
Glsi02g0824 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Glsi02g0824 197 CDD S4 109 153 - -
Glsi02g0824 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
Glsi02g0824 197 Gene3D - 108 164 IPR036986 GO:0003723
Glsi02g0824 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Glsi02g0824 197 SMART s4_6 109 180 IPR002942 GO:0003723
Glsi02g0824 197 FunFam 40S ribosomal protein S9 108 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0824 Glsi-ChrGlsi02 5320267 5322414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0824 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.979 8.85e-127 353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0824 02 5320267 5322414 Glsi13g1173 13 29280374 29282255 ECH
Glsi02g0824 02 5320267 5322414 Glsi02g0824 02 5320267 5322414 ECH