Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0823 ATGTCTAGCAGGAGAAGCTCCACAGCTCCAAAATTCACAGAGAATGAGCTTAAGGAGCTTGTTTCCAGGTTGCAAGCAATGCTGCCACAGCTAAACCAAAGAACCAACTCAAGGGAATCAATATCGAAGATTTTGAAAGAAACTTGCAGTCACATCAAGAAGCTTCAGAAAGAGGTGGAAGAGCTTAGTGAAAGGCTAGCAGGGCTGATGAATTCTGTGGATATCAATGATATTGACGAAGAAAGTCTTAGAAATTTTTTACAACAATAA 270 0.4 MSSRRSSTAPKFTENELKELVSRLQAMLPQLNQRTNSRESISKILKETCSHIKKLQKEVEELSERLAGLMNSVDINDIDEESLRNFLQQ 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0823 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 73 IPR036638 GO:0046983
Glsi02g0823 89 Coils Coil 45 72 - -
Glsi02g0823 89 Coils Coil 14 34 - -
Glsi02g0823 89 Gene3D - 13 85 IPR036638 GO:0046983
Glsi02g0823 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Glsi02g0823 89 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0823 Glsi-ChrGlsi02 5318732 5319139 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0823 9 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 42.500 1.80e-17 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g0823 None None None