Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0820 ATGCCACGCGGCTCACTTTGTTCTTGGTTGGAGCAAGAACATGGAGTAAGATCAAGGTCAAGACAATCAAGTGGTTCAAGGATCACCGACGATCAGATCAATGACCTTGTTGCCAAGTTGCAGCAACTTCTTCCCGAGATTCGCGATAGGCGCTCTGATAAGGGTTCAGCAGCGAAGGTGTTGCAAGAGACATGCAACTACATCAGAAGCTTAAACAGGGAAGTGGAGGATCTAAGCGAGCGCTTGTCTGAGCTGTTGGCTACCACTGACACGGCCCAAGCTGCCATTATTAGAAATTTGCTCATGCAATAA 312 0.4808 MPRGSLCSWLEQEHGVRSRSRQSSGSRITDDQINDLVAKLQQLLPEIRDRRSDKGSAAKVLQETCNYIRSLNREVEDLSERLSELLATTDTAQAAIIRNLLMQ 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0820 103 Gene3D - 27 99 IPR036638 GO:0046983
Glsi02g0820 103 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 71 IPR011598 GO:0046983
Glsi02g0820 103 PANTHER TRANSCRIPTION FACTOR PRE 17 102 IPR044293 GO:0006355|GO:0040008|GO:0046983
Glsi02g0820 103 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 89 IPR036638 GO:0046983
Glsi02g0820 103 Pfam Helix-loop-helix DNA-binding domain 31 71 IPR011598 GO:0046983
Glsi02g0820 103 CDD bHLH_AtPRE_like 28 88 - -
Glsi02g0820 103 FunFam Transcription factor ILI6 19 98 - -
Glsi02g0820 103 Coils Coil 61 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0820 Glsi-ChrGlsi02 5288027 5289937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0820 28 103 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 77.922 1.32e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g0820 HLH 2e-06 No_clan