Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0819 ATGGGAAATTGCTTTCGAGCTCGTTCCAAGGGTACCGCTCAGCCTTTTTCTGATGCTACAAAAGTTCCTAGTAGAAGCACTCATTCACATGGTCATTCAAGTTCAGTGCACGGATACAGTGATAAAGGTAAACCTGAAACTCTCCCCCTTCCAAGATCTGAAGGTGACATACTTTCCTCCCCACATTTGAAACCCTTCACATTCAATGAGCTTAAGAATGTCACTAGAAACTTTCGTCCTGATAGTCTACTTGGACAAGGGGGATTTGGTTATGTCTACAAGGGGTGGGTTGATGAAGAATCCCTTGAAGCCGCAAGGCCTGGATCTGGAATGGTTGTAGCTGTAAAGAAGCTAAAGTCTGAAGGTTATCAAGGGCATAAGGAGTGGCTATCTGAACTCAATTATCTTGGCCAACTTCGTCATCCTAATCTTGTCAAACTTGTTGGATACTGCTTGGATGGAGATAACCGGCTTCTGGTGTACGAGTACATGCCCAAAGGAAGCTTGGAGAATCATCTATTTCGCAGGGGCGCACAACCACTTCCTTGGGCAACAAGGATCAAAGTCGCTATTGGTGCCGCTCGAGGTCTCACCTTCCTACACGACTCTGAGCAACAAGTTATCTACCGTGATTTCAAGGCTTCAAACATTTTACTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGTTTCGCCAAAGCGGGGCCCACCGGCGATCGTTCTCATGTTTCCACTCAAGTCCTTGGTACTCATGGCTATGCTGCTCCTGAATATTTTGCTACAGGTTGGCTGACTGCAAAGTGTGATGTCTATAGCTTTGGGGTTGTGCTGTTGGAATTACTATCAGGACGCCGTGTAGTTGATAAGACAAAATCTGGAGTTGAACAAAATCTGGTAGAATGGGCAAGACCGTATTTGGGTGATAGGAGGAAGTTATTCCGGATTATGGATACCAAGTTAGAAGGGCAGTACCCACAGAGGGCAGCTTATACAGCTGCAATCCTTGCACTACAGTGTACCAGTGAGGCCAAACTCAGACCCCAGATGTCCGAGGTTTTGGCTACTCTAGAGCAGTTGCCAGTTGTCAGAAGTTCAGCTAACTCATCCAGAGTAGAGCAGAACTCCACCCCAAGCCCCAAGGTAGATCAGAGTCTTAAGGAAATATCCCCTTTGAGACATAATCATCATCCAGCAGAACAGAAGTCTGTGTCCAGTCACGTTAGTGACAACAGTAGTACTGTAAGATCCCCAAAGGCATCCCCAGTTAAATCCCCAAATAAGAAATCTCCAAGGGGACAATATAACAGGAGTGGATATTCTCTTCAAGTGGACACCACAACGTAA 1347 0.4566 MGNCFRARSKGTAQPFSDATKVPSRSTHSHGHSSSVHGYSDKGKPETLPLPRSEGDILSSPHLKPFTFNELKNVTRNFRPDSLLGQGGFGYVYKGWVDEESLEAARPGSGMVVAVKKLKSEGYQGHKEWLSELNYLGQLRHPNLVKLVGYCLDGDNRLLVYEYMPKGSLENHLFRRGAQPLPWATRIKVAIGAARGLTFLHDSEQQVIYRDFKASNILLDSEFNAKLSDFGFAKAGPTGDRSHVSTQVLGTHGYAAPEYFATGWLTAKCDVYSFGVVLLELLSGRRVVDKTKSGVEQNLVEWARPYLGDRRKLFRIMDTKLEGQYPQRAAYTAAILALQCTSEAKLRPQMSEVLATLEQLPVVRSSANSSRVEQNSTPSPKVDQSLKEISPLRHNHHPAEQKSVSSHVSDNSSTVRSPKASPVKSPNKKSPRGQYNRSGYSLQVDTTT 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0819 448 ProSitePatterns Protein kinases ATP-binding region signature. 84 117 IPR017441 GO:0005524
Glsi02g0819 448 MobiDBLite consensus disorder prediction 1 58 - -
Glsi02g0819 448 MobiDBLite consensus disorder prediction 387 403 - -
Glsi02g0819 448 PANTHER OS01G0588500 PROTEIN-RELATED 35 360 - -
Glsi02g0819 448 MobiDBLite consensus disorder prediction 13 36 - -
Glsi02g0819 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Glsi02g0819 448 MobiDBLite consensus disorder prediction 364 448 - -
Glsi02g0819 448 ProSiteProfiles Protein kinase domain profile. 78 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0819 448 Gene3D Transferase(Phosphotransferase) domain 1 164 382 - -
Glsi02g0819 448 FunFam Serine/threonine-protein kinase BIK1 46 163 - -
Glsi02g0819 448 CDD STKc_IRAK 84 360 - -
Glsi02g0819 448 Gene3D Phosphorylase Kinase; domain 1 50 163 - -
Glsi02g0819 448 MobiDBLite consensus disorder prediction 404 448 - -
Glsi02g0819 448 SUPERFAMILY Protein kinase-like (PK-like) 53 357 IPR011009 -
Glsi02g0819 448 FunFam Serine/threonine-protein kinase PBS1 164 376 - -
Glsi02g0819 448 Pfam Protein tyrosine and serine/threonine kinase 82 289 IPR001245 GO:0004672|GO:0006468
Glsi02g0819 448 MobiDBLite consensus disorder prediction 364 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0819 Glsi-ChrGlsi02 5280311 5283126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0819 3 357 Glycoside Hydrolase AT3G07070 47.297 4.03e-108 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi02g0819 PK_Tyr_Ser-Thr 2.3e-43 CL0016