Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0813 ATGGGGAAGTCACCAGGAAAATGGATCAGAACTGTACTGTTTCGGAAAAAGTCATCCAAATCAAATATTTTAAAAGGACGAGAGAAACTTGTTGAGCAGAAAGAAGCATTGGTTGCTTCCAACTCTCCAGAAACTGCTTTGTCTTTTGATCCAACTCCCAATACTTTTGCCAGAAATGAGGGGAATCTAGAACTAGAAAATAAAGAAACAGAAAATCTTATTCCAAGGAATCAAGAAATTGATGTTGTGGGATCTGATCATCAAGATGCCCCAACTGATCCAGAGAAAATAAGGGAGGAGGAAGCTGCAACGAAAGCGCAGGCTGCTTTTAGAGGTTATTTGGCTCGCAGGGCATTTAGGGCCCTTAAAGACATAATAAGGTTGCAAGCACTCATTCGTGGGCACTTGGTTAGGAGACAGGCTGTTGCTACTCTATGTTGTATGTATGGGATTATCAAGTTACAAGCACTTGTTCGTGGAGGAAGGGTTAGGCAGTTTGATGTTGGATTTGAAATGCAGGAGAAGTGCAATCTAGTAAAGCCTCAGAATGGCAAGCTTGTCAATCCAGTTGGTACAACCACAAAAATTGCAAATCTGTCAGCAAATAGGTTTATCCGTCAGCTGCTTGCTTCATCAACTACTATAATGCCTTTGCACCTCCAATATGCTTCTGGGGATCCAAACTTAGTCCTAAATTGGTTGGAACGCTGGTCAGCATCTCACTTTTGGAAACCAGTTCCCCAACCCAAGAAACTTCTAGACTCTAAGTCTCAGAGAAAGCAGAGTAATATCTCAATTGGAGAAGCTCAAACAAGCAAGTCAAAGCGTAGAAATTGGAAGATTCCTACTGCAAATTTTGACTTAGTTTCAGTGCAACCAAATCCTGAATTTGAGAAATCAAACCAAAACCCAAGGAAAATTTCAAGCCAGCCTGTGGATCCGGTGCAGGAAAATCCACAAAATGAGTTTGAAAAAGTTAAACGTAATTTGAGAAAGGTTCATAACCCCATTGTTGAGAATGCTGTTCAGTCAGAAGTTGAATATGAAACCTCAAAGCAGCATTCAGAAAAGGCAACACTCCCCTCAGGTCATGGTGTTTCAGAAGAAGGAGTCACTAGTTCTGATGAGAAGACCAAGGAAGCAACATTGACCATTTCCAATGTACCTGATGTGGGAATTTCACCTAGAATTTTGGTTAGCAAGGAGGAATCTGACATGCCAAATAGTTATCAAGTGGCCTTGGATTTGGAGCCCTTGAGAGATAATACAAGTAGAGATAAAAACAATTCTGGTGAAGAACCTACCAATGAGCCAAAAGATCTACCAGAGAGTTGTGAAGATGAAAATTCTCCCTTAACAAATGGAGATTTGAGTCTTAAGGAAGAGTCAACGGGAAATGAAAACCAGAAACCCAGTTGGAGACCCTCATTTCTAACTAAGCAAGAATGTGTAGAGGAGGGTTTACAGAATACTCCAACGTTACCAAGCTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGAGCACAAGGGTCCCCAAGGTTTGGACAAGATAAAGGCAAGAGAAGCAATCTACCCCGGAGACATTCTCTGCCATCTTCAACTAACAGTAAAATTAGCTCACATTCACCAAGGACGCAGAAACCAGTTCAAGCAGGTGGCAAAGGGGGTTACAGAAGTGACATAACTATGTCTTCTTCTAGAGAAGGGAATGGAAAATTAATTCAAGCAGAATGGAGGAGGTGA 1749 0.4151 MGKSPGKWIRTVLFRKKSSKSNILKGREKLVEQKEALVASNSPETALSFDPTPNTFARNEGNLELENKETENLIPRNQEIDVVGSDHQDAPTDPEKIREEEAATKAQAAFRGYLARRAFRALKDIIRLQALIRGHLVRRQAVATLCCMYGIIKLQALVRGGRVRQFDVGFEMQEKCNLVKPQNGKLVNPVGTTTKIANLSANRFIRQLLASSTTIMPLHLQYASGDPNLVLNWLERWSASHFWKPVPQPKKLLDSKSQRKQSNISIGEAQTSKSKRRNWKIPTANFDLVSVQPNPEFEKSNQNPRKISSQPVDPVQENPQNEFEKVKRNLRKVHNPIVENAVQSEVEYETSKQHSEKATLPSGHGVSEEGVTSSDEKTKEATLTISNVPDVGISPRILVSKEESDMPNSYQVALDLEPLRDNTSRDKNNSGEEPTNEPKDLPESCEDENSPLTNGDLSLKEESTGNENQKPSWRPSFLTKQECVEEGLQNTPTLPSYMAATESAKAKLRAQGSPRFGQDKGKRSNLPRRHSLPSSTNSKISSHSPRTQKPVQAGGKGGYRSDITMSSSREGNGKLIQAEWRR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0813 582 Pfam Protein of unknown function (DUF4005) 475 561 IPR025064 -
Glsi02g0813 582 MobiDBLite consensus disorder prediction 528 549 - -
Glsi02g0813 582 PANTHER IQ-DOMAIN 5-RELATED 1 541 - -
Glsi02g0813 582 MobiDBLite consensus disorder prediction 258 317 - -
Glsi02g0813 582 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Glsi02g0813 582 MobiDBLite consensus disorder prediction 402 582 - -
Glsi02g0813 582 MobiDBLite consensus disorder prediction 334 383 - -
Glsi02g0813 582 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Glsi02g0813 582 Pfam IQ calmodulin-binding motif 125 140 IPR000048 GO:0005515
Glsi02g0813 582 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Glsi02g0813 582 MobiDBLite consensus disorder prediction 447 476 - -
Glsi02g0813 582 Gene3D - 96 146 - -
Glsi02g0813 582 SMART iq_5 121 142 IPR000048 GO:0005515
Glsi02g0813 582 SMART iq_5 98 120 IPR000048 GO:0005515
Glsi02g0813 582 MobiDBLite consensus disorder prediction 248 319 - -
Glsi02g0813 582 MobiDBLite consensus disorder prediction 483 498 - -
Glsi02g0813 582 MobiDBLite consensus disorder prediction 419 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0813 Glsi-ChrGlsi02 5246173 5251585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0813 1 582 IQD Protein Family AT1G74690 43.657 1.31e-126 382
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0813 02 5246173 5251585 Glsi13g1181 13 29368500 29373499 ECH
Glsi02g0813 02 5246173 5251585 Glsi02g0813 02 5246173 5251585 ECH