Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0810 ATGGAGTTTGCTTTGGGAAGATCTAGTCATGGAGGTAGAGTCAAGGAAGAGAAGAGAAGTGAATCTAGTGGTGGTGGAGCTGATGAAGCTCGCCGCAAAGAAGAGATTGATGTCGAGGCGCCGCCTATGGTGGAGACTGGACCAAAAGCACCTTTAACCAAAAAGGACGAAGAGGCTGACGAAGTTGAATCTGCTAAAGCCGAAATGGGTGAGGTGATACAAGAAAACCAAAGGTTGAAGCAGTGTTTGGACCGTGCACTGAAGGATTATCGAACGCTGCAAATGCAATTCCACGATGTAGTTCAGAAAGAAACAAAAGAATCTGCCGATAAAAAACATGATCATGACCATCAAGAATTAATAACTGAGGAATCTGATGAACTAGTTTCCCTCAGCCTTGGAAGAGTTTCGAGTTATCCAAGAAACTATGAGAAAAGCAAAGTCTTCCAACCAATATTGAAGGATGAACAGTATAAAGAAAACTTGGCTCTTGGATTGGACTGCAAATTCGAAACATCAAAATCTGGAAGCACAATTGAAGCTTTACCAGATTCAAGCCCCGCCAATAGCTCTGAAGTACCGAAGGATGAAGCCGGGGAGACTTGGCCACCTAGTAAAGTTCTCAAAACTATGAGAGATAATGGTGGAGAAGACGATGTTTCCCAACAGAATCCTGCAAAGAAAGCTAGAGTGTGCGTGAGAGCAAGATGTGAAGCACCAACAATGAATGATGGATGCCAGTGGAGGAAATATGGACAAAAGATAGCCAAGGGAAATCCTTGTCCTAGAGCTTACTATCGTTGCACAGTTGCACCGTCATGCCCCGTAAGAAAACAGGTGCAAAGATATGCTCAGGACATGTCCATTTTAATTACCACTTATGAAGGAATCCACAACCACCCTCTTCCTCTTTCAGCTACTGCCATGGCTTCCACTACTTCCGCAGCCGCTTCCATGCTTCTGTCTGGCTCAATATCATCAAGTTCTCGCCCTGGCTCAACAGCCACGCCCACCACTTCGCCTGATCTCCATGGTCTGAATTTCTATCTCTCAGATGGTTCCAAATCAAAGCAATTCTACCTCTCCAATCCCGCACTATCGTCATCACCTTCACACCCCACAATCACTCTTGACCTCACCACAAACCCAGCCTCTTCCTCGTCTCACTTTGGTAGATTCACTTCAAACTACAACCCACCAAGATACCCTTCTTCCACAAGTCTCAACTTCAATTCTTCCCAACCCACTAATGCAATCCCTTGGAGCAATGATTTTCTCGGCCACAATAACAAAACCATAAACCTTGGAAGATCAACAATGGAAAATATCTACCAGCTGCCTTACATGCAAAAGAACAATAATCCAACTCCTCCAGCTCATCATACTCTACCAGATACAATAGCAGCAGCAACGAAAGCAATCACAGCAGACCCAACATTTCAGTCAGCTTTAGCAGCTGCTCTTAGTTCAATTATTGGCAATGGAAGTAGTGGGATTGGAAGCATCCAAGGTAATCATCATGGGGTTGGAGAAAGTTTGGCTCACAAAATTATGAAATGGGGAGAGGTTTTTCCAGCAGCGTCTTCTAGCTTGCCATCGTCAACTTCGAAAGTGAATGGCTTTTATTTCGGCATCCGCTTCCGGGTGGTGACAATGTCGACTCCTGCTAGGAAGAGGCTGATGAGAGATTTTAAGAGGCTGCAACAAGACCCACCTGCAGGAATCAGTGGTGCGCCTCAGGACAACAATATAATGCTTTGGAATGCTGTAATATTTGGTCCTGATGATACTCCTTGGGACGGAGGCACGTTTAAGTTGACTCTCCAATTTTCAGAGGACTATCCAAACAAACCACCAACAGTGCGATTTGTCTCTCGAATGTTTCATCCTAATATTTATGCAGATGGGAGTATTTGTTTGGATATATTACAAAATCAGTGGAGTCCAATATATGATGTAGCTGCTATACTCACATCTATCCAGTCACTGCTATGTGATCCCAACCCAAATTCTCCTGCAAACTCAGAAGCTGCTCGAATGTTCAGCGAGAACAAGCGTGAGTACAATAGAAGAGTGAGGGAAATTGTGGAGCAGAGTTGGACAGCTGACTAA 2112 0.4441 MEFALGRSSHGGRVKEEKRSESSGGGADEARRKEEIDVEAPPMVETGPKAPLTKKDEEADEVESAKAEMGEVIQENQRLKQCLDRALKDYRTLQMQFHDVVQKETKESADKKHDHDHQELITEESDELVSLSLGRVSSYPRNYEKSKVFQPILKDEQYKENLALGLDCKFETSKSGSTIEALPDSSPANSSEVPKDEAGETWPPSKVLKTMRDNGGEDDVSQQNPAKKARVCVRARCEAPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRYAQDMSILITTYEGIHNHPLPLSATAMASTTSAAASMLLSGSISSSSRPGSTATPTTSPDLHGLNFYLSDGSKSKQFYLSNPALSSSPSHPTITLDLTTNPASSSSHFGRFTSNYNPPRYPSSTSLNFNSSQPTNAIPWSNDFLGHNNKTINLGRSTMENIYQLPYMQKNNNPTPPAHHTLPDTIAAATKAITADPTFQSALAAALSSIIGNGSSGIGSIQGNHHGVGESLAHKIMKWGEVFPAASSSLPSSTSKVNGFYFGIRFRVVTMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0810 703 Coils Coil 55 96 - -
Glsi02g0810 703 MobiDBLite consensus disorder prediction 1 69 - -
Glsi02g0810 703 FunFam Ubiquitin-conjugating enzyme E2 2 552 699 - -
Glsi02g0810 703 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 45 500 IPR044810 GO:0003700
Glsi02g0810 703 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 555 701 IPR000608 -
Glsi02g0810 703 Gene3D WRKY domain 227 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g0810 703 MobiDBLite consensus disorder prediction 9 40 - -
Glsi02g0810 703 SMART ubc_7 558 701 - -
Glsi02g0810 703 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g0810 703 Pfam Ubiquitin-conjugating enzyme 559 695 IPR000608 -
Glsi02g0810 703 SUPERFAMILY UBC-like 547 701 IPR016135 -
Glsi02g0810 703 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 628 643 IPR023313 -
Glsi02g0810 703 MobiDBLite consensus disorder prediction 177 225 - -
Glsi02g0810 703 MobiDBLite consensus disorder prediction 50 68 - -
Glsi02g0810 703 Gene3D Ubiquitin Conjugating Enzyme 550 699 IPR016135 -
Glsi02g0810 703 Pfam WRKY DNA -binding domain 243 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g0810 703 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g0810 703 CDD UBCc 558 696 IPR000608 -
Glsi02g0810 703 SUPERFAMILY WRKY DNA-binding domain 235 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g0810 703 FunFam probable WRKY transcription factor 31 227 304 - -
Glsi02g0810 703 MobiDBLite consensus disorder prediction 177 192 - -
Glsi02g0810 703 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0810 Glsi-ChrGlsi02 5227618 5239661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0810 69 513 WRKY Transcription Factor Family AT5G15130 40.937 8.92e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi02g0810 UQ_con 3.2e-51 CL0208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0810 02 5227618 5239661 Glsi02g0810 02 5227618 5239661 ECH