Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0802 ATGGTTGAGGACAGCTACTATCTAGAGGTGCCATTCCACTATACCTCAACTGCGTTCAAGAAGCTCTTCAGCTTCTTAGCATTATTCAATTTACCTAAGATTACATATAAAAAAATGTCCTGGATAAATGTAATAGAAGCTAGGAAGTGGGATTTGTTTTCTTGTGTTCTACGATCACTTAGGACCATTCATTGGGCCACAACTTTATATGGCACCGATGCCGAGGAAGCTTCTCTCTCCCACATCAATCCTAGGAGGTTTCTCAGTTTCACTGATCTAGGCAGAAAGGCAGAGGGAAATCCCAAAAAAGAAAGAGAGAGATCTTCAAGAACAAGAACAACGTCAATGGAAGCAAACAAGCTTAGCTTGCTATTGTTTTGTGTGATATATCTTGCTATAATTCCAACCTTTAGAGCTAATATAGGCAACTTCGATTATGTCTGGCAGAAACGATCTCAGGAAGCCAAGAAGGCTGCTCGCGAGGCTTACCAGCCAGACCCTCACAAAGCTACTGGACATTTCAATAACCAGGTCCACTTGTCTCTGGAAGGAGCCAATAGCACAAGAAGGGATTTAGGGAAATACAAGGGAGCATGCATGGCCACCAACCCAATAGACAAATGCTGGAGATGCGATCCAAACTGGGCTAACAACCGCAAGAAGCTAGCAGACTGTGTCATAGGTTTTGGCCACGGCACCACCGGAGGCAAAGATGGCAGAATCTATGTCGTCACTGACCCATCCGACAAGGACCTCATCAACCCAAAACCCGGGACCCTACGACATGCTGTGATCCAACCAGAGCCATTATGGATCATTTTCGCACGTAGTATGATCATCATGCTGTCTCAAGAGCTCATGGTAACTAGCAACAAGACCATAGATGCACGTGGCGCCAACATTCAAATTAGAAATGGTGCCCAAATTACCTTGCAATTTGTGAAAAATATTATCATTCATGGGCTTCACATCCATGACAGTAAAAGGTCTGGTGGTGGCCTCATTAGAGACTCTGTGAATCACTTTGGATTCCGCACGGTTTCTGACGGTGATGGGATATCCTTGTTTGGAGCCACAAATGTTTGGATTGATCATATCTCTATGTCCCATTGCGATGATGGCTTAATCGATGCTGTCATGGCTTCAACCGCCATTACCATCTCCAATTGCCATTTCACCAATCACAATGAAGTAATGTTATTTGGAGGAAGTGACTCGTACGCAGGGGATCAAGTGACGCAGATAACAATAGCATTCAACCATTTTGGGCAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTTCATGTTGTCAACAATGACTACACCCATTGGCGCATGTATGCCATTGGTGGTAGTCAACATCCCACCATCATCAGCCACGGCAACCGATTTATTGCACCTCCTGACCAAAATACCAAAGAGGTGGCACAGAGGTTTTATGCACCTAAAAGTGAGTGGATCAAATGGAATTGGAGATCAGAGGGAGATTTATTGATGAATGGAGCCATCTTTACGGAGTCCGGAGGCCCAGTTCCACATCTTCCCAACACATTCATCACAGTACAACCAGGCGCAGTTGCCAACACGCTTACGCGCTTTTCAGGGGCTCTAAATTGTAAAGTGAACAAGCCATGTTGA 1650 0.4503 MVEDSYYLEVPFHYTSTAFKKLFSFLALFNLPKITYKKMSWINVIEARKWDLFSCVLRSLRTIHWATTLYGTDAEEASLSHINPRRFLSFTDLGRKAEGNPKKERERSSRTRTTSMEANKLSLLLFCVIYLAIIPTFRANIGNFDYVWQKRSQEAKKAAREAYQPDPHKATGHFNNQVHLSLEGANSTRRDLGKYKGACMATNPIDKCWRCDPNWANNRKKLADCVIGFGHGTTGGKDGRIYVVTDPSDKDLINPKPGTLRHAVIQPEPLWIIFARSMIIMLSQELMVTSNKTIDARGANIQIRNGAQITLQFVKNIIIHGLHIHDSKRSGGGLIRDSVNHFGFRTVSDGDGISLFGATNVWIDHISMSHCDDGLIDAVMASTAITISNCHFTNHNEVMLFGGSDSYAGDQVTQITIAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRMYAIGGSQHPTIISHGNRFIAPPDQNTKEVAQRFYAPKSEWIKWNWRSEGDLLMNGAIFTESGGPVPHLPNTFITVQPGAVANTLTRFSGALNCKVNKPC 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0802 549 Pfam Pectate lyase, N terminus 140 192 IPR007524 GO:0030570
Glsi02g0802 549 PRINTS Pollen allergen Amb family signature 225 242 IPR018082 -
Glsi02g0802 549 PRINTS Pollen allergen Amb family signature 249 274 IPR018082 -
Glsi02g0802 549 PRINTS Pollen allergen Amb family signature 429 448 IPR018082 -
Glsi02g0802 549 PRINTS Pollen allergen Amb family signature 349 370 IPR018082 -
Glsi02g0802 549 PRINTS Pollen allergen Amb family signature 493 517 IPR018082 -
Glsi02g0802 549 PRINTS Pollen allergen Amb family signature 451 470 IPR018082 -
Glsi02g0802 549 PRINTS Pollen allergen Amb family signature 285 301 IPR018082 -
Glsi02g0802 549 Pfam Pectate lyase 285 468 IPR002022 -
Glsi02g0802 549 SUPERFAMILY Pectin lyase-like 195 543 IPR011050 -
Glsi02g0802 549 Gene3D - 202 542 IPR012334 -
Glsi02g0802 549 SMART amb_all 277 474 IPR002022 -
Glsi02g0802 549 PANTHER PECTATE LYASE 18-RELATED 155 547 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0802 Glsi-ChrGlsi02 5181397 5185431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0802 116 549 Polysaccharide Lyase AT3G01270 56.303 0.0 537