Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0797 ATGGCGGGTGGGAGGGTCTTTAGTGGTTCTCGTAGAAATGCTTCGAATTTGAGTCTTTTGCTTCCAAATCAAGCTGGTCCTTGCACTTCTGAGCCTCTTGATGGTCTTTTCCTTTCTGGGTCTTCCTCTCCTTTCCTCGGTTCAAGATCCATGGTGAGCTTTGAAGATGTTCAAGGAGGGAAAGGGTATAATAGATCGTTCTTCTGCCCTTTTGATCGTGAAGAAAATGGAGATGATGACATGGACGAATACTTTCATCAACCTGAGAAGAAGAGGCGGCTCACTGCTGACCAAGTGCAGTTTCTTGAGAAAAGCTTTGAGGTAGAGAATAAGCTTGAACCAGAGAGGAAAATTCAACTAGCCAAGGACGTTGGCTTGCAGCCTCGACAAGTAGCCATTTGGTTTCAGAACCGCCGGGCACGGTGGAAGACAAAACAGCTAGAGAAGGATTATGAATCTTTGCAGGCTAGCTACGACAGTCTTAAAGCTGACTATGATAAACTTCTCAATGAGAAAGATAACTTAAAAGCTGAGGTTGCAAATCTCACAGAAACGATGCTTCTCAGAGACAAACAAGGGGGAAACTTTAACCAGGCGGAAACAAACAAAATTCAGGAACCACCCCAAAAGCCTTTACTTGATACAGCAACTTCCGAGGGTGAAGGTTCCAAAGTCTCTGTTGGGGCATGCAAACAGGAAGACATAAGTTCTGCCAAGAGTGACATATTTGATTCGGATAGTCCACATTACACTGATGGAGTTCACTCTGCACTTCTGGAGCCTGGTGATTCTTCTTATGTGTTCGAACCTGATCAGTCTGATCTATCTCAGGATGAAGAAGATAACTTGAGCAAGACTCTGTTTCCTCCATACATATTTCCCAAGCTCGAAGATGTCGATTACTCCGACCCGCCCGAAAGTTCATGTAATTTTGGGTTTCCAGTGGAAGATCATGCCTTTTGGTCCTGGTCCTACTAG 978 0.4468 MAGGRVFSGSRRNASNLSLLLPNQAGPCTSEPLDGLFLSGSSSPFLGSRSMVSFEDVQGGKGYNRSFFCPFDREENGDDDMDEYFHQPEKKRRLTADQVQFLEKSFEVENKLEPERKIQLAKDVGLQPRQVAIWFQNRRARWKTKQLEKDYESLQASYDSLKADYDKLLNEKDNLKAEVANLTETMLLRDKQGGNFNQAETNKIQEPPQKPLLDTATSEGEGSKVSVGACKQEDISSAKSDIFDSDSPHYTDGVHSALLEPGDSSYVFEPDQSDLSQDEEDNLSKTLFPPYIFPKLEDVDYSDPPESSCNFGFPVEDHAFWSWSY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0797 325 Gene3D - 93 139 - -
Glsi02g0797 325 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Glsi02g0797 325 SUPERFAMILY Homeodomain-like 75 147 IPR009057 -
Glsi02g0797 325 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Glsi02g0797 325 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Glsi02g0797 325 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Glsi02g0797 325 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Glsi02g0797 325 MobiDBLite consensus disorder prediction 198 229 - -
Glsi02g0797 325 SMART HOX_1 88 149 IPR001356 GO:0003677
Glsi02g0797 325 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Glsi02g0797 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 231 IPR045224 GO:0003700
Glsi02g0797 325 Coils Coil 137 185 - -
Glsi02g0797 325 FunFam Homeobox-leucine zipper protein HAT5 83 147 - -
Glsi02g0797 325 CDD homeodomain 90 146 IPR001356 GO:0003677
Glsi02g0797 325 MobiDBLite consensus disorder prediction 252 281 - -
Glsi02g0797 325 Gene3D - 140 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0797 Glsi-ChrGlsi02 5161588 5163107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0797 34 256 Homeobox Transcription Factor Family AT3G01470 41.739 1.01e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi02g0797 Homeodomain 1.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0797 02 5161588 5163107 Glsi02g0797 02 5161588 5163107 ECH