Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0780 ATGTCCCAAGGATCTCCCCTTCCTCCACCGATTCCCAGCGAACCCTTCAACCGATCCTCGCCTGAACCCAATTCCCAGAACCACATCTCCGATTCCCAGAACGGCATCCCCACTTCTAAGGAGGAAACCACTGTCGCTCCCACCACTACTAGGAGCAACCGCCCTTCTCGCGCGTGCACCATTCGCGCTGCTTCTCGTCTCTATTCAAGAGCGCAGCCGGCGATTGAGCGGAAGCCCAGAGCTTCGAAGAAGGAGCAGCGGCTGGAGGACTCGCCGCAGCAACAGCAACAGCAGCAATGCAGCAAGATCGTGACGCCGCTGGTGGAACCGCCCCCACCTTCGCAGTTGCCTCGGTGGAACCTGCGGTCCATGTGGGAGTTATCTTCCGTACTCAATTTCTTGCATATATTTAGGCCTCTTTTGAATATCTCACTAGAATTCTCGGCCGAAGAGTTCGAGACAGCTCTCCTTACGCCTAACGACACATTGGGTGATATACACATGCCCTTGCTAAAGGCAATCCCTCCCATTACACGAATGGCACTCACACGTGATACTTGGATAACCGTATTATGCAGAAAATTGCGAGATTGGTGGCATTGGGTTGCAGATGGGGAGATCCCTATTGTTGCTTCACATGGGGTTGAAATTGAAGCATATAAATCACTTGATCCGGGGGTCCGTGTTGTCATCTTAAAGGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCCGAAGTTATATTGACAACTCAGTCAAACATGGTGTTCAACTTTCAACATTTCGTAAAGAGCGTATTGGGGGCGATTCACAAGGAATTTCTTATTGGTATGAAGATGATCCAATTATTGGTCATAGGTTGTATCGGGAAGTACGGAAAACTGAAGTGATTCAAACGAGAAAAGGGAAAGCAAAAGGTTCCCGAGTCCAATCTAGTACAACCTACCAGTGGGAAGCTGTTGCTACTAATTTTGATGAATTTCAAGATGTCTCCGATAAACTTTTCTCAAGTAAAAACAGAACGGAGACTTCTCTAGGGAAAAAGCTGAAGATAGACATGCTTCCTGAGATTGAGAAAGTTCATAAGAGAAAAGAGAGGATGCTGAAAAAGCAACACAGACAAGCTCTTCTTCTTGATAATTTCTTGGTTGTCGATGGGATTGGTCCTGGGCGATCACTTCGTGATAGGAAACCTGTTACCTACACATTTGATGATTATGATCGGTCCATCAATGAGGCAATTAAGATAACTAAACGAAAACAACCATCCCCAGAGCCTATAGCCACGAGAGAAGTAATAGATAAACCTGAAGCTCTGACCAATGGTAAATGGAGTGGTCCTTCACATGCCCCTCAATATCTGAGTTTTGGTATGTCATCTCCAAAATCCCCTGACTTTGATGATGCTGAGGAAGAGCTTAAATCTGAACCATTGGATCGAAGCAACCGGCGAAGACAAAGACCTATGCGCTATTCAGAGAAAGAGTTTGTTGAAGCAGTATCAGATAATGAGGCAGACTTTGACAGTGATGATGATATTGTTGGAGAAGCTGTATATGATGAAGAATATCTCAGGCAACGTAAGCAAAGAAGGAAGCTTTCTAGTAGCTCTGAAGGAGATGAAGAATACCAGTGGGACGAAGAAAATGTTGAAGACGAAGAAGAATATGATGGGGAAGATTCCTTGAGTATCAGTGAGGACAGTGACAAGCCCCGTAAATTCAAGCAATTGCCAGGCCGAACTAGGAGGGAAACTAAACTCAGATCTGTAGATGAGATTCAATCAGGTCTACGACGTAGTAAGAGGGCCACCAGAAATCGTATAAATTACCGTCAATATGAGGCGTCAGAATCAGAAACAGAGTCAACAAAGCCCGAGAAGTCTAATGCCACAGATGATCACTCAGATCCCAGCGAGAATGGGGAATATGTCATGGAGAGTGAAGATTCAGATGGCAACAATAATGAAGATCATGAAATGAAAGTAGATAGGCCTGTCGCATATCCTCCAGAAGAGAAAGAACAAAACCAGCCTCCTGAAAAATTAAATAGTCCCGGTCAGGAGGAAGTTGAGGGCATGAAAAAAAGGCGTTTCCTTGATTTGAATGAGCTTGCACCTAGTTCAGGTTTTGATGATGGTCCAAACCCGATAATGAAAGATGAAGACAACAATGATTACTGA 2184 0.4496 MSQGSPLPPPIPSEPFNRSSPEPNSQNHISDSQNGIPTSKEETTVAPTTTRSNRPSRACTIRAASRLYSRAQPAIERKPRASKKEQRLEDSPQQQQQQQCSKIVTPLVEPPPPSQLPRWNLRSMWELSSVLNFLHIFRPLLNISLEFSAEEFETALLTPNDTLGDIHMPLLKAIPPITRMALTRDTWITVLCRKLRDWWHWVADGEIPIVASHGVEIEAYKSLDPGVRVVILKALCDIRVEQEDIRSYIDNSVKHGVQLSTFRKERIGGDSQGISYWYEDDPIIGHRLYREVRKTEVIQTRKGKAKGSRVQSSTTYQWEAVATNFDEFQDVSDKLFSSKNRTETSLGKKLKIDMLPEIEKVHKRKERMLKKQHRQALLLDNFLVVDGIGPGRSLRDRKPVTYTFDDYDRSINEAIKITKRKQPSPEPIATREVIDKPEALTNGKWSGPSHAPQYLSFGMSSPKSPDFDDAEEELKSEPLDRSNRRRQRPMRYSEKEFVEAVSDNEADFDSDDDIVGEAVYDEEYLRQRKQRRKLSSSSEGDEEYQWDEENVEDEEEYDGEDSLSISEDSDKPRKFKQLPGRTRRETKLRSVDEIQSGLRRSKRATRNRINYRQYEASESETESTKPEKSNATDDHSDPSENGEYVMESEDSDGNNNEDHEMKVDRPVAYPPEEKEQNQPPEKLNSPGQEEVEGMKKRRFLDLNELAPSSGFDDGPNPIMKDEDNNDY 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0780 727 MobiDBLite consensus disorder prediction 564 600 - -
Glsi02g0780 727 Pfam DDT domain 129 174 IPR018501 -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 541 563 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 613 642 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 1 17 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 18 59 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 419 491 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 525 540 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 525 727 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 655 679 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 465 491 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 1 112 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 688 702 - -
Glsi02g0780 727 PANTHER REMODELING AND SPACING FACTOR 1 50 697 IPR028938 GO:0006355|GO:0031213
Glsi02g0780 727 MobiDBLite consensus disorder prediction 76 90 - -
Glsi02g0780 727 MobiDBLite consensus disorder prediction 446 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0780 Glsi-ChrGlsi02 5043601 5050200 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Glsi02g0780 DDT 1.2e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0780 02 5043601 5050200 Glsi13g1206 13 29541846 29550711 CCT
Glsi02g0780 02 5043601 5050200 Glsi02g0780 02 5043601 5050200 ECH