Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0753 ATGGCTTCTTCTTCTGCAGTCCGAGATCCTTCCAGGCACTACACCTATAACCGGAAGCAGAAATCTCTCGGCCTCTTGTGCACCAATTTCTTGAGCTTGTATAATCGAGATGGAATTCACTTGATCGGGCTTGACGATGCGGCTGCGCGATTAGGGGTCGAGAGACGACGGATCTATGATATAGTTAATGTATTGGAGAGTGTCGGGGTGCTCTCAAGAAAAGCCAAGAATCAATATACTTGGAAAGGATTTGAGGCAATTCCTGGTGCTTTACAGGAGTTAAAGGAAGAGGGTACGAGGGAAAATTGCGATGCTTTTGATGGCGGCCACGATAATGCAAAGGTGTCAGACGATGAGGATGACGAAGAAACGTTATCCAATCCCAGTACAGGGAGTCAGAATGACAAGTCAAATCCTAATTCTACCCTCCTTAAGTCTTTGAAGAATGATAACCGAAGGGAAAAATCGTTGGCACTTCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATGTGGAAATGATTTCCCTTGATGAAGCTGCAAGATTGTTGCTTGGGGATGCCCATAATTCGTCAATAATGAGAACAAAAGTTAGACGTCTATATGATATTGCAAATGTGCTGTCCTCCATGAACCTAATTGAGAAGACCCATACATCCGACACAAGAAAGCCAGCATTCAGGTGGCTAGGGTTGAAGGGAAAAACAGAGAATGAGTCTATTCACAATTCTAATCCCAGTGAATCCAGGAAAAGGATATTTGGAAATGATGTCACAAATATCAGTTTTAAGAGGAATAAAGTGGATTTATTCACTAATCGGGACTTAAATCAGAATCCTAAGATGCATAGTAAAATGGACGATGGTAGTTGGCTAGGTCAGGCAGATAAAAGCAATTTAAAACAGGACACAAAGCAGAGCTCAAGGAGCTATCAGTTTGGTCCTTTCGCTCCAGTCCACGTGCCCAAAGGGAGTGCCTCTGAGAGTGATAATACCAAGCGGCTGCATGATTGGGATAATCTCGCAACTGCCTTTCGTCCTCAGTATCAAAACCAAGCTTTGAGAGAACTCTTCTCCCATTACATGGAAGCATGGAAATCATGGTTCTCAGAAGTCGCTGGGAAGAGGCCAATACAGATTTTGTAA 1149 0.4317 MASSSAVRDPSRHYTYNRKQKSLGLLCTNFLSLYNRDGIHLIGLDDAAARLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFEAIPGALQELKEEGTRENCDAFDGGHDNAKVSDDEDDEETLSNPSTGSQNDKSNPNSTLLKSLKNDNRREKSLALLTQNFVKLFVCSNVEMISLDEAARLLLGDAHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGLKGKTENESIHNSNPSESRKRIFGNDVTNISFKRNKVDLFTNRDLNQNPKMHSKMDDGSWLGQADKSNLKQDTKQSSRSYQFGPFAPVHVPKGSASESDNTKRLHDWDNLATAFRPQYQNQALRELFSHYMEAWKSWFSEVAGKRPIQIL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0753 382 MobiDBLite consensus disorder prediction 101 115 - -
Glsi02g0753 382 FunFam E2F transcription factor 8 13 85 - -
Glsi02g0753 382 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Glsi02g0753 382 PANTHER TRANSCRIPTION FACTOR E2F 11 351 IPR015633 GO:0000978|GO:0006357
Glsi02g0753 382 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Glsi02g0753 382 MobiDBLite consensus disorder prediction 296 314 - -
Glsi02g0753 382 FunFam E2F transcription factor-like E2FE 147 234 - -
Glsi02g0753 382 MobiDBLite consensus disorder prediction 101 148 - -
Glsi02g0753 382 MobiDBLite consensus disorder prediction 126 146 - -
Glsi02g0753 382 Gene3D - 147 234 IPR036388 -
Glsi02g0753 382 Gene3D - 13 85 IPR036388 -
Glsi02g0753 382 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Glsi02g0753 382 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Glsi02g0753 382 MobiDBLite consensus disorder prediction 275 333 - -
Glsi02g0753 382 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Glsi02g0753 382 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0753 Glsi-ChrGlsi02 4913018 4916046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0753 13 379 E2F-DP Transcription Factor Family AT3G48160 58.289 8.18e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi02g0753 E2F_TDP 2.2e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0753 02 4913018 4916046 Glsi02g0753 02 4913018 4916046 ECH