Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0745 ATGGGTTGCAACAATGGCAAGCACAGGTGGACGCTCTGTTTCTTTCGTTCTTCCTCTAACTCCAAGCACCCTCCCAAGGAGTTTATTTGCCCAATTTCTGGCCGTTTCATGTCCGACCCAGTTGTTGTCGCTTCCGGTCACACCTTCGAGCGAGTTTCTGTTCAAGTCTGCGGAGATTTGAAGTTCTCCCCCGCCTTAGAAGACGGGTCCCGACCCGATTTCTCCACAGTCTTTCCCAATTTAGCCATCAAAACCACCATCTTCAATTGGTGCAAAGAGTCTAGGATGGAATACCCCCCCGCGCCTGATTATAGCTCTGTGGAGAGGGTTGTCCGAGCAGCAATGGCGTCCCAGCTGGGCTCCAGAGAGCCAGAATTAAGGGTTTCGGAGAGGAATTTGCTGAAGGCAGTGGCGGATAATCCGCCGGTGATTTTCTCCCACGCTGCCACTGAGTTGGGTCCCCGGGTTAACCGCTGCAACTCGAGCTCATCGGAGGAATCGGTAATCATTGTGGCCAGTCCCGGCACCCCTTTGCCTCTAACTACTCGTCCAACCTGTTACTCTTCCTCGTCGTCTTCGGTCGAAATCGCCGAGACCGGAATCCAAAACCCTACTAGCCCGGCTTCCGAGGAAGAGGGCAAATTGGTGGCGAAGCTGAGGAGCAGCGAAATTTTTGAGCAAGAAGAAGGCGTTATTTCATTGAGAACTATCACGAGGAATAGAGAGAACACAAGGATTTCCCTCTGCACGCCCCGGTTGCTCTCAGCCCTCCGAATCCTGGTCGTATCTAGGTACGCCGTTGTGCAAGTAAACGCCGTCGCTTCGCTGGTCAACCTTTCGCTTGAGAAATCCAATAAGGTGAAGATCGTAAGGTCGGGTTTCGTCCCCCATCTCATCGACGTCTTGAAGGGGGGATTGGACGAATCGCAGGAACACGCAGCGGGTGCACTCTTCAGCTTAGCCCTAAACGACGATAACAAAATGGCAATCGGAGCACTGGGCGCATTGCAGCCACTGATGCACGCGTTAAGGTCCAAGTCGGAGGGGACCCGGCGCGACTCGGCGCTCGCGTTGTACCACCTGACCTTAGTCGAAATCAACCGGGTCAAGCTCGTGACACTGGGCGCGGTGCCTACGCTACTAACAATGGTGAAATCGGGGAATTTAACGAACTGGGTCTTGTTAATTCTGTGTAATCTATCAGTCTCCCCGGTGGGCCAAACGGCAATGCTCGACGGTAATGCAGTTGAGTGCTTGGTGGGTTTACTGAGGGGGAAGGAGTTGGACTCGGAGGAAACACGGGAGAAATGTGTGGTAGCTTTGTATGGGCTTAGCCATGGAAGCTTAAGGTTCAAAGCGTTGGCAAAGGAGGCAAGGGCTGTTGAGGTGTTAAAGGAGGTTGAAGAGAGAGGAACAGAGAGAGCCAGAGACAAGGCCAAGAGAGTAGTGCAGATAATGAGGGCAGGAAGGGGAGGGGAAGATGGAAAGGAGGCGAATTTTGATGGGATTTTAGAAGGGGACTGGTTTAACCGAAGGTTCCGAGGTGATGGTGCGAACTCGACCGTATTTTAG 1572 0.5299 MGCNNGKHRWTLCFFRSSSNSKHPPKEFICPISGRFMSDPVVVASGHTFERVSVQVCGDLKFSPALEDGSRPDFSTVFPNLAIKTTIFNWCKESRMEYPPAPDYSSVERVVRAAMASQLGSREPELRVSERNLLKAVADNPPVIFSHAATELGPRVNRCNSSSSEESVIIVASPGTPLPLTTRPTCYSSSSSSVEIAETGIQNPTSPASEEEGKLVAKLRSSEIFEQEEGVISLRTITRNRENTRISLCTPRLLSALRILVVSRYAVVQVNAVASLVNLSLEKSNKVKIVRSGFVPHLIDVLKGGLDESQEHAAGALFSLALNDDNKMAIGALGALQPLMHALRSKSEGTRRDSALALYHLTLVEINRVKLVTLGAVPTLLTMVKSGNLTNWVLLILCNLSVSPVGQTAMLDGNAVECLVGLLRGKELDSEETREKCVVALYGLSHGSLRFKALAKEARAVEVLKEVEERGTERARDKAKRVVQIMRAGRGGEDGKEANFDGILEGDWFNRRFRGDGANSTVF 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0745 523 PANTHER U BOX DOMAIN-CONTAINING 24 486 - -
Glsi02g0745 523 Gene3D - 211 486 IPR011989 -
Glsi02g0745 523 SMART arm_5 403 446 IPR000225 GO:0005515
Glsi02g0745 523 SMART arm_5 323 363 IPR000225 GO:0005515
Glsi02g0745 523 SMART arm_5 282 322 IPR000225 GO:0005515
Glsi02g0745 523 Pfam Armadillo/beta-catenin-like repeat 323 362 IPR000225 GO:0005515
Glsi02g0745 523 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Glsi02g0745 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 98 IPR013083 -
Glsi02g0745 523 FunFam RING-type E3 ubiquitin transferase 210 486 - -
Glsi02g0745 523 SUPERFAMILY RING/U-box 18 99 - -
Glsi02g0745 523 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Glsi02g0745 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 293 330 IPR000225 GO:0005515
Glsi02g0745 523 Pfam U-box domain 25 95 IPR003613 GO:0004842|GO:0016567
Glsi02g0745 523 SUPERFAMILY ARM repeat 214 467 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0745 Glsi-ChrGlsi02 4851068 4852639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0745 24 522 U-box Gene Family AT5G65200 56.190 0.0 521