LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g0736	ATGTTTGCAGGCACTACCCAAAAGTGCAAAGCATGTGAGAAAACAGTGTACTTGGTGGATCAGCTTACTGCTGACAATAAGGTGTACCACAAGTCTTGCTTCAGATGTCACCATTGCAAGGGTACCCTTAAGCTGAGTAATTATTGTTCCTTTGAGGGCGTTTTATACTGCAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCAGTTTGGACAAAAGTTTTGAAGATATTCCAAGAACTGCTAGAGTTGACAGATCTGATCAGGTCCAGACCAACAGCAAAGTTTCAAGTTTATTTGGTGGAACTCAAGAAAAGTGTGTTGCTTGCAAGAAAACAGTATACCCAATAGAAAAGGTGGCTGTTGATGGCAAATCTTACCATAAGGCTTGTTTTAGGTGCACCCACGGAGGATGTGTAATCAGCCCTTCAAATTATGTGGCCCATGAACATCGCCTTTACTGCAGGCACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAGCTTGACAATCATGATAATGTCAATGGGGTGACTGAGAACACGCCAACCGAGTAA	567	0.4286	MFAGTTQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEDIPRTARVDRSDQVQTNSKVSSLFGGTQEKCVACKKTVYPIEKVAVDGKSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDNHDNVNGVTENTPTE	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g0736	188	FunFam	LIM domain and actin-binding 1	3	73	-	-
	Glsi02g0736	188	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	133	171	-	-
	Glsi02g0736	188	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	2	34	-	-
	Glsi02g0736	188	CDD	LIM1_SF3	5	66	-	-
	Glsi02g0736	188	ProSitePatterns	LIM zinc-binding domain signature.	9	43	IPR001781	-
	Glsi02g0736	188	Gene3D	Cysteine Rich Protein	102	171	-	-
	Glsi02g0736	188	Gene3D	Cysteine Rich Protein	3	73	-	-
	Glsi02g0736	188	Pfam	LIM domain	107	162	IPR001781	-
	Glsi02g0736	188	Pfam	LIM domain	9	63	IPR001781	-
	Glsi02g0736	188	CDD	LIM2_SF3	107	167	-	-
	Glsi02g0736	188	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	35	75	-	-
	Glsi02g0736	188	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	100	132	-	-
	Glsi02g0736	188	FunFam	LIM domain and actin-binding 1	101	171	-	-
	Glsi02g0736	188	ProSiteProfiles	LIM domain profile.	7	67	IPR001781	-
	Glsi02g0736	188	SMART	lim_4	8	60	IPR001781	-
	Glsi02g0736	188	SMART	lim_4	106	158	IPR001781	-
	Glsi02g0736	188	ProSiteProfiles	LIM domain profile.	105	165	IPR001781	-
	Glsi02g0736	188	PANTHER	OS06G0237300 PROTEIN	5	87	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g0736	Glsi-ChrGlsi02	4795824	4797602	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Glsi02g0736		LIM	8e-11	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi02g0736	02	4795824	4797602	Glsi13g1258	13	30044217	30050463	CCT
	Glsi02g0736	02	4795824	4797602	Glsi02g0736	02	4795824	4797602	ECH