Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0727 ATGCCCCAGCAAAAGGATGGTGGTTCGAAGTACCCATCACCAGAATTACCTTTCTCTTCATTCCAAACTCCTTATTATGGTATTACCAATGAGAAAGAATCATCCCCTTCATCATCTATAAGCGGAATCAGTCCACTTATTCTACTGGTTATAATAGCTTTAGCAGTTATCTTCTTCGTCTATGGAACTGTCCATTTGGTTCTCTGGTTTCTGATGAAAAGGCCATCCTCTTCATCTCATTATCAATCCAATAGATTCCCAGAAACGACCCGTTCCCGTGCTCTTCAAAGGCAGCTTCAGCAGCTCTTCCGCTTACACGACTCAGGTCTAGATCAGGCTCTCATAGATGCCCTACCAGTTTTTTACTACGAAGATGTATCGGGCTCGAAAGAACCATTTGATTGTGCTGTGTGTCTCTGTGAATTTTCGGACCAAGACAAGCTGAGATTACTGCCCATATGCAGCCATGCTTTTCACATCAATTGCATAGACACATGGCTTCTCTCAAATTCTACATGCCCTATTTGTAGAGCCACTCTCTCAAGCTCTGTTTTTCCCATGGAAAACCCAATATTTAACCTTGATAATTCCTGGGTTGTGTCAGATAGATTCATAGGCGATGAAGAGAATGGGTGTTCAGAGAGTCAGAGAGCAGTAACCGGGGAAGATCAAGTTGGTGAAAGAAGGGTGTTTTCCGTGAGACTTGGAAAGTTCAGAAACAATGGGGTAGAGGGTGAAGAGGTAGGACGAGAAGAGGCTAGTAGCTGTAATTTGGATGCTAGGAGATGCTACTCCATGGGTTCATATCAGTATGTAGTGAGTGGTTCAAATCTGCAGGTGGTATTATCTCATAACAGAAGCAAAGGTGAAATTGCAGAGAATGAAGATGAGGACGGAAAGAGGATAGGGGACAGAAGAAGCAAAGGTGAGAGCTTCTCTGTTTCGAAGATCTGGCTTTGGTCCAATAAGAGCAAATTTCATAGTTCTTCTAATGCCGCTTTCCCTTGA 1008 0.4325 MPQQKDGGSKYPSPELPFSSFQTPYYGITNEKESSPSSSISGISPLILLVIIALAVIFFVYGTVHLVLWFLMKRPSSSSHYQSNRFPETTRSRALQRQLQQLFRLHDSGLDQALIDALPVFYYEDVSGSKEPFDCAVCLCEFSDQDKLRLLPICSHAFHINCIDTWLLSNSTCPICRATLSSSVFPMENPIFNLDNSWVVSDRFIGDEENGCSESQRAVTGEDQVGERRVFSVRLGKFRNNGVEGEEVGREEASSCNLDARRCYSMGSYQYVVSGSNLQVVLSHNRSKGEIAENEDEDGKRIGDRRSKGESFSVSKIWLWSNKSKFHSSSNAAFP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0727 335 CDD RING-H2_EL5-like 134 177 - -
Glsi02g0727 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 184 IPR013083 -
Glsi02g0727 335 FunFam RING-H2 finger protein ATL46 97 182 - -
Glsi02g0727 335 MobiDBLite consensus disorder prediction 289 311 - -
Glsi02g0727 335 SUPERFAMILY RING/U-box 114 183 - -
Glsi02g0727 335 SMART ring_2 135 176 IPR001841 -
Glsi02g0727 335 Pfam Ring finger domain 134 177 IPR001841 -
Glsi02g0727 335 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Glsi02g0727 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 39 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0727 Glsi-ChrGlsi02 4731588 4732595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0727 62 330 C3H Transcription Factor Family AT2G18650 42.671 1.12e-57 190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0727 02 4731588 4732595 Glsi02g0727 02 4731588 4732595 ECH