Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0723 ATGCGCGCTCTTTTCTGCCTGCTTAGCTGTTTAGATGTGCTTCCTTGTTCTGGTACATTGGCTGGATTTATTTCGCTCAATGGAATTGCAGAAAAGATGGTGGCTAGATCATGCATGAATTTGTTGGACTTGGTGTCAGGGGACATTTTGAATTTCCCGCAAACTCCCGGAGCTCTTCCGCAAGTTATGACTGTTCCGGGAATTATGTCTGATGTAGATGGAAAACAAAGTACTGATGATCATGATTCGCAAGCTCTCTCATCAGAATACCATCAAAAGATCATTATAGTGGCAAATTTTCTTCCTCTCAATGCTCAAAAGGATAAAAAATCTGGCAGATGGTGCTTTAGTTATGATGAAGATTCAATTTTGTTGCAGCTAAAGGATGGTATCTCTACCAATACTGATGTTGTTTATGTGGGATCTTTGAAGGTTGAGGTCGATGAAAGTGAACAAGAGAAAGTTTCTCTTGAGTTGCTGGAGGAATTCAAGTGCGTGCCTACCTTTCTTCCTTCAGATCTCCAGAAACAGTTTTATAATGGATTCTGCAAGCAATATTTGTGGCCTCTATTCCATTACATGTTACCCATGTTTCCTAGCTATTGCAATCGCTTTGATAGGTCACTCTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAGGTTATGGAGGTTATTAATCCAGAAGAAGATTTTGTATGGGTTCATGATTATCATCTTATGGTCCTCCCAACATTTCTGCGGAAGAGGTACAGTCGGATCAAGCTAGGATTTTTCCTCCACAGTCCATTCCCTTCATCAGAAATTTATAGAACCCTGCCTGTCAGATATGAAATTTTAAAAACACTGCTTAATGCAGATTTAATTGGGTTTCATACATTTGATTATGCTCGCCATTTTCTGTCTTGCTGCAGTCGAATGCTTGGCTTGGAATATGAATCCAAAAGGGGTTACATTGGGCTTGAATACTTTGGCCGCACAATAAACATCAAAATTCTGCCCGTAGGAATTCATATGGGTCGACTTCAATCTTCCTTAAACCACCCATCTTCTTCTGTCAAAGTCAGAGAAATCAGAGAGCAATTTAAGGGGAAAAAGCTTATTCTTGGTGTTGATGATATGGACATATTCAAAGGCATCAGTCTGAAGCTCTTGGCCATAGAACAACTCTTGCAGCAGAATCCAGAACTGCAGGGTGAATTAGTACTGGTGCAAATTGTAAACCCTCCAAGGAGTTCTGGCAAAGATGTTGAGGAGGCAAAGAGGGAGACATACATTACTGCCAAAAGGATAAATGAAAGGTTTGGTTTGCCAAATTATGAACCTGTGATCATCATAGATCGTCCTGTTCCTTTATATGAGAAGACAGCCTATTATGCTTTGGCTGAGTGTTGCATTGTGAATGCAGTGAGGGATGGTATGAATTTAGTTCCATACAAGTACATTGTCTGTAGGCAGGGGAGTACAAAAACGGATGAAGCCTTGGGCGTTTCTCTTGAGTCTCCTCGTACAAGTGCACTTGTTGTTTCTGAGTTCATAGGTTGCTCTCCATCACTCAGTGGGGCACTGAGGGTGAATCCGTGGAACATTGATGCTGTAGCTGATGCAGTAAATTTGGCCATAACAATGCCCGGCATAGAGAAACAGTTGCGCCATGAGAAGCACTATCGATATGTTAGCTCTCATGATGTGGCCTACTGGGCTCGAAGTTTCATGCAAGATCTAGAGCGTGCATGCCTGGATCACTACAGTAAACGTTGCTGGGGTATTGGCTTTGGACTGAGTTTCAGAATCTTGTCCCTTTCTCCTAGTTTTAGGAAGCTATCCATAGACCGCATTGTCTCTGCATATAAAAGAACTAATCGTAGGGCTATTTTTTTGGATTATGATGGTACAATTGTACCCCAAGCTTCCATTGTTAAAAGCCCCAGTCCTGAAGTCATATCTGTTCTAAATCAACTAAGCAATGACCCTAAGAACACTGTGTTTATAGTTAGTGGCAGGGGGAAGACCTCATTGAGCGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTATAAGGTGGGGTAAACAGTCAAGTTGGGAAACCAGTCATTTAGGTACAGATTTTGCTTGGAAAACTATTGCTGAACCTGTGATGAGATCATATACTGAGGCAACAGATGGCTCTCATATAGAGACCAAGGAGAGTGCCTTGGTATGGCACTATTATGATGCCGATCCTGATTTTGGATCTTGGCAGGCCAAGGAGCTGTTGGATCACCTTGAAAGTGTCCTTGCAAATGAGCCGGTGGTTGCTAAAAAGGGACAGCATATTGTTGAAGTTAAGCCACAGGGAATTACTAAAGGGTTAGTTGCAGAGAAAGTTCTGTCCACACTGAGCGGGAATGGGCAACCACCGGATTTTGTTCTGTGCATTGGGGATGATAGGTCTGATGAGGATATGTTCGAGAGCATATCAACCAAAGTTTACAGAGAAACCCCATCTGCAGCACCAGAAATCTTTGCATGCACTGTTGGCCAAAAACCCAGCAAAGCTAGGTACTACCTAGATGATACAGTAGACGTGATGATGTTACTTCAAGGCCTTGGTACTGTGAGCCCCGTTTAA 2637 0.4224 MRALFCLLSCLDVLPCSGTLAGFISLNGIAEKMVARSCMNLLDLVSGDILNFPQTPGALPQVMTVPGIMSDVDGKQSTDDHDSQALSSEYHQKIIIVANFLPLNAQKDKKSGRWCFSYDEDSILLQLKDGISTNTDVVYVGSLKVEVDESEQEKVSLELLEEFKCVPTFLPSDLQKQFYNGFCKQYLWPLFHYMLPMFPSYCNRFDRSLWQAYVSANKIFADKVMEVINPEEDFVWVHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIYRTLPVRYEILKTLLNADLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYFGRTINIKILPVGIHMGRLQSSLNHPSSSVKVREIREQFKGKKLILGVDDMDIFKGISLKLLAIEQLLQQNPELQGELVLVQIVNPPRSSGKDVEEAKRETYITAKRINERFGLPNYEPVIIIDRPVPLYEKTAYYALAECCIVNAVRDGMNLVPYKYIVCRQGSTKTDEALGVSLESPRTSALVVSEFIGCSPSLSGALRVNPWNIDAVADAVNLAITMPGIEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACLDHYSKRCWGIGFGLSFRILSLSPSFRKLSIDRIVSAYKRTNRRAIFLDYDGTIVPQASIVKSPSPEVISVLNQLSNDPKNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFIRWGKQSSWETSHLGTDFAWKTIAEPVMRSYTEATDGSHIETKESALVWHYYDADPDFGSWQAKELLDHLESVLANEPVVAKKGQHIVEVKPQGITKGLVAEKVLSTLSGNGQPPDFVLCIGDDRSDEDMFESISTKVYRETPSAAPEIFACTVGQKPSKARYYLDDTVDVMMLLQGLGTVSPV 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0723 878 Pfam Trehalose-phosphatase 628 861 IPR003337 GO:0003824|GO:0005992
Glsi02g0723 878 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 581 - -
Glsi02g0723 878 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 86 345 - -
Glsi02g0723 878 NCBIfam HAD-IIB family hydrolase 626 830 IPR006379 -
Glsi02g0723 878 Gene3D Glycogen Phosphorylase B; 346 562 - -
Glsi02g0723 878 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 60 873 IPR001830 GO:0003824|GO:0005992
Glsi02g0723 878 FunFam Trehalose-6-phosphate synthase 2 708 787 - -
Glsi02g0723 878 Gene3D - 707 787 - -
Glsi02g0723 878 FunFam Alpha,alpha-trehalose-phosphate synthase 347 562 - -
Glsi02g0723 878 CDD GT20_TPS 93 578 IPR001830 GO:0003824|GO:0005992
Glsi02g0723 878 NCBIfam trehalose-phosphatase 623 870 IPR003337 GO:0003824|GO:0005992
Glsi02g0723 878 CDD HAD_TPP 626 867 - -
Glsi02g0723 878 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 624 741 - -
Glsi02g0723 878 Pfam Glycosyltransferase family 20 93 578 IPR001830 GO:0003824|GO:0005992
Glsi02g0723 878 SUPERFAMILY HAD-like 625 872 IPR036412 -
Glsi02g0723 878 FunFam Trehalose-6-phosphate synthase 10 755 878 - -
Glsi02g0723 878 Gene3D - 627 859 IPR023214 -
Glsi02g0723 878 Gene3D Glycogen Phosphorylase B; 85 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0723 Glsi-ChrGlsi02 4713318 4717822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0723 33 876 Trehalose Biosynthesis Gene Families AT1G23870 71.327 0.0 1290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0723 02 4713318 4717822 Glsi13g1268 13 30118251 30124772 CCT