Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0718 ATGATACCCAAATCTTTTTCTCAAAGGATACGGAGTTCCCTCGGTTGTTTTTTTGTTTATTTGGTTACAAAAATGACTCCTAAATCCAATCACGCTGATCGCCGTAGTCTCTCATTTCCCGCGGTGCACCCATGCGAAGCTATATCTCCCGCCACCCTTCTCTCCTCTTTGATTTCTCTCTCGCGCAATATCTGCAATTTCCAATCCTACTTCTTCCCCACCCAACGACGAAATGCCAGAGAAACCATACGCCAGGTTGGTATTATCCTCATATTTCTTGAGGAAATTCGAGAGCGCGAATTCTTAAACCCAGAATCCCTTGTTCTCTGCTTTTCCGAGCTCCACTTGAGTTTCCAAAAACTTCAGTTCTTGATGGAAGATTGCACTCGTGAGGGTGCTCGACTTTGGATGCTTATGAAATCTCAATACGTTGCCACCCAATTTCGGGTTCTTATTCGTGCTATAGCCACTGCTCTTGACGTTCTGCCTCTCGATCGGTTTGATGTTTGTGGTGAAGTGAAAGAGCTAGTGGAATTAGTAGCCAGGCAAGCTCGGAAAGTGAAGTTCGAGCTCGACTCAGATGACGAAGGAAATGCCAAACGAGTTTATTCGGTTTTGCATCAGTTTGAGAAGGGAATCGAACCTGACTTGACTGATATGAAGCGGATCCTTGATTATCTCCAAGTGAAGAGCTGGACTGATTGTAACCAAGAGATCAAATTCTTAGATGATGAAATCAGCTCAGAGTGCGATGAGCGAGAGGTCCCTTCTCTCAGTAGTTTGCTCGGCTTCTTGAGCTACTGCAGGGGAGTGATATTCGAAACTCTAGATTTCAATAGCGCCACCGATCCCTCGGAAGGAAGGTGTAGTACAGAGATGCCTAATTGCATTAACCCAGAGGATTTCCGGTGCCCAATTTCGCTTGAGCTGATGACTGACCCAGTAACGGTATCGACGGGTCAGACTTACGATCGAGCTTCCATTCAGAAATGGCTGAAAGCTGGAAACAGGATATGCCCCAAAACAGGGGAGAAGCTGCCCAACGCAAACTTGGTCCCAAACACAACGCTCCGAAAGCTAATCCAACAGTTCTGTGCTGATAATGGCGTTTCTCTCACCAAATTCGGCAACCAGAGTCGTGACATAACGAGGACCATCGTCCCAGGTAGCCCAGCATCAGCACATGCTATGCAATTCCTTTCTTGGTTTCTTGCTCGGACGCTCGTGTTTGGAACAAGCGACCAGAAAAACAAGGCTGCTTACGAGATTCGTTTGCTTGCAAGGTCCAACATTTTCAACCGGGCGTGTTTGATTGAAGTGGGAACAGTGCCCCCTCTGCTAAACCTTTTGGCCACGAATGATAAATCCACTCAAGAGAATGCCATGGCTGCTCTGTTGAAGCTCTCCAAGCATACCAGGGGCAAAGAGAATATCATGGAAAATGGGGGTCTAACTCCGATTCTTATGGTTCTAAAAAAAGGACCAAGTTTAGAAGCTCGCCAAATTGCAGCTGCTACTATATTTTATCTTGCTTCAGTGAAACAGTACAGGAAGTTAATCGGAGAAATCCCAGAGGCAATTCCATCTCTAGTAGAACTGATAAAGGAAGGAACAACTTGCGGAAAGAAGAATGCTGTGGTTGCGATTTTTGGGCTGCTCTTACATCCTAAGAATCATCAAAGGGTGCTTGCAGCTGGTACTGTAACTGCCCTTGTTGGTATTATAGATTCCTCGGACAAGGCTGATCTTATCACTGATTCGTTAAAAGTTCTTGCAGCCCTGGCGGAGAATGTTGAGGGAGCACAAGCTATATTAGAAGCCAAGGCTGTAGCTTTAATTTCTGGGATTTTGCAGTCTATAACAAGGCATGCAGGGAAAGAACACTGTGTTTCGATTTTGCTGTCACTGTGCGTGAATTTGGGGGCAGAGGTGGTGGGTGTTGTAGCGAAGGACACATCGCTCATGCCTTTTCTCTATTCGCTTTTTACAGATGGTACTTGTCATGCGGGTAAAAAAGCACATTTCCTCGTCAAAGTTCTACAGGATTTTAAAGAAACAAGAGCAGCTTCTGGATTGATGGATTCGTCGGTTGCACAAGAACAATCCCTTCACGTTCGGTGA 2121 0.4573 MIPKSFSQRIRSSLGCFFVYLVTKMTPKSNHADRRSLSFPAVHPCEAISPATLLSSLISLSRNICNFQSYFFPTQRRNARETIRQVGIILIFLEEIREREFLNPESLVLCFSELHLSFQKLQFLMEDCTREGARLWMLMKSQYVATQFRVLIRAIATALDVLPLDRFDVCGEVKELVELVARQARKVKFELDSDDEGNAKRVYSVLHQFEKGIEPDLTDMKRILDYLQVKSWTDCNQEIKFLDDEISSECDEREVPSLSSLLGFLSYCRGVIFETLDFNSATDPSEGRCSTEMPNCINPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNRICPKTGEKLPNANLVPNTTLRKLIQQFCADNGVSLTKFGNQSRDITRTIVPGSPASAHAMQFLSWFLARTLVFGTSDQKNKAAYEIRLLARSNIFNRACLIEVGTVPPLLNLLATNDKSTQENAMAALLKLSKHTRGKENIMENGGLTPILMVLKKGPSLEARQIAAATIFYLASVKQYRKLIGEIPEAIPSLVELIKEGTTCGKKNAVVAIFGLLLHPKNHQRVLAAGTVTALVGIIDSSDKADLITDSLKVLAALAENVEGAQAILEAKAVALISGILQSITRHAGKEHCVSILLSLCVNLGAEVVGVVAKDTSLMPFLYSLFTDGTCHAGKKAHFLVKVLQDFKETRAASGLMDSSVAQEQSLHVR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0718 706 FunFam RING-type E3 ubiquitin transferase 297 372 - -
Glsi02g0718 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Glsi02g0718 706 Gene3D - 378 692 IPR011989 -
Glsi02g0718 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 566 609 IPR000225 GO:0005515
Glsi02g0718 706 SUPERFAMILY RING/U-box 299 372 - -
Glsi02g0718 706 SUPERFAMILY ARM repeat 412 678 IPR016024 -
Glsi02g0718 706 FunFam RING-type E3 ubiquitin transferase 378 691 - -
Glsi02g0718 706 CDD RING-Ubox_PUB 299 351 IPR045210 -
Glsi02g0718 706 ProSiteProfiles U-box domain profile. 297 371 IPR003613 GO:0004842|GO:0016567
Glsi02g0718 706 Pfam Armadillo/beta-catenin-like repeat 433 468 IPR000225 GO:0005515
Glsi02g0718 706 PANTHER U BOX DOMAIN-CONTAINING 91 680 - -
Glsi02g0718 706 SMART arm_5 429 470 IPR000225 GO:0005515
Glsi02g0718 706 SMART arm_5 471 512 IPR000225 GO:0005515
Glsi02g0718 706 SMART arm_5 555 596 IPR000225 GO:0005515
Glsi02g0718 706 Pfam U-box domain 299 368 IPR003613 GO:0004842|GO:0016567
Glsi02g0718 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 372 IPR013083 -
Glsi02g0718 706 SMART Ubox_2 301 364 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0718 Glsi-ChrGlsi02 4687780 4689900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0718 32 691 U-box Gene Family AT1G60190 41.667 1.82e-173 511
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0718 02 4687780 4689900 Glsi02g0718 02 4687780 4689900 ECH